andreas pushed a commit to branch python-team
in repository guix.
commit 6cd3a6595fce404e059252d6787ba16a0cff34e4
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sat Apr 5 16:04:24 2025 +0100
gnu: python-decoupler-py: Update to 1.8.0.
* gnu/packages/bioinformatics.scm (python-decoupler-py): Update to 1.8.0.
[arguments] <phases>: Add 'relax-requirements.
[native-inputs]: Remove python-wheel; add python-poetry-core.
Change-Id: I6ef7548dcbe90c87e049fef12402bcc58f807ce4
---
gnu/packages/bioinformatics.scm | 15 +++++++++++----
1 file changed, 11 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 3cadefd2f8..74c95a6f39 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2796,16 +2796,18 @@ parsing of Variant Call Format (VCF) files.")
(define-public python-decoupler-py
(package
(name "python-decoupler-py")
- (version "1.6.0")
+ ;; Upstream places release on a new branch, see
+ ;; <https://github.com/saezlab/decoupler-py/issues/175>.
+ (version "1.8.0")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/saezlab/decoupler-py";)
- (commit (string-append "v" version))))
+ (commit version)))
(file-name (git-file-name name version))
(sha256
(base32
- "1mqkp0i8k5hzhfnka4nc2f0phmrs0k404ynbl1lqfjzywx25y75h"))))
+ "0c3yg7jjb1nxb6hsh9wn7wr8w0ba55gixdbf5fp443nhv1cwlajj"))))
(build-system pyproject-build-system)
(arguments
(list
@@ -2821,6 +2823,11 @@ parsing of Variant Call Format (VCF) files.")
" and not test_get_collectri"))
#:phases
'(modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; numba = "^0.60.0"; all tests passed.
+ (("0.60.0") "0.61.0"))))
(add-before 'check 'set-home
;; Some tests require a home directory to be set.
(lambda _ (setenv "HOME" "/tmp")))
@@ -2842,7 +2849,7 @@ parsing of Variant Call Format (VCF) files.")
python-skranger
python-tqdm
python-typing-extensions))
- (native-inputs (list python-pytest python-wheel))
+ (native-inputs (list python-poetry-core python-pytest))
(home-page "https://github.com/saezlab/decoupler-py";)
(synopsis
"Framework for modeling, analyzing and interpreting single-cell RNA-seq
data")
