guix_mirror_bot pushed a commit to branch master
in repository guix.
commit d8d9e51a1f65c47502b73f557e28941ceeae11b2
Author: David Elsing <[email protected]>
AuthorDate: Tue Jul 29 16:19:32 2025 +0200
gnu: freesasa: Fix build with newer gemmi.
* gnu/packages/chemistry.scm (freesasa)[arguments]: Add 'fix-new-gemmi
phase.
Change-Id: I78997047eba8245a2d275af5ab18d0d0fe48630f
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/chemistry.scm | 6 ++++++
1 file changed, 6 insertions(+)
diff --git a/gnu/packages/chemistry.scm b/gnu/packages/chemistry.scm
index f70434b232..9ee7280407 100644
--- a/gnu/packages/chemistry.scm
+++ b/gnu/packages/chemistry.scm
@@ -1136,6 +1136,12 @@ It can be used for working with
(string-append "AM_PROG_LIBTOOL\n" inst)))
(substitute* "tests/Makefile.am"
(("libfreesasa\\.a") "libfreesasa.la"))))
+ (add-after 'unpack 'fix-new-gemmi
+ (lambda _
+ (substitute* "src/cif.cc"
+ (("models\\[i\\]\\.name")
+ "std::to_string(models[i].num)")
+ (("convert_pair_to_loop") "ensure_loop"))))
(add-before 'build 'build-lexer-and-parser
(lambda _
(with-directory-excursion "src"
