guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 7c0fd7440e1c73e2f1bb703a226cae0e45da8cdc
Author: Cayetano Santos <[email protected]>
AuthorDate: Tue Aug 19 20:58:39 2025 +0200
gnu: libsvm: Update to 3.36.
* gnu/packages/machine-learning.scm (libsvm)[source]: Switch to git-fetch.
[arguments]: Use G-Expressions.
<#:phases>{install}: Simplify.
* gnu/packages/machine-learning.scm (python-libsvm)[build-system]: Switch to
pyproject-build-system.
<#:phases>: Add chdir.
[native-inputs]: Add python-setuptools, python-wheel.
[propagated-inputs]: Add libsvm, python-scipy.
* gnu/packages/bioinformatics.scm (seek)[arguments]:
Adapt #:configure-flags accordingly.
Change-Id: Icf9f1081f037fb2fcda999a0c22e20d75d63c8c0
Signed-off-by: Danny Milosavljevic <[email protected]>
---
gnu/packages/bioinformatics.scm | 2 +-
gnu/packages/machine-learning.scm | 96 +++++++++++++++++----------------------
2 files changed, 42 insertions(+), 56 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a7135759f9..3f831d419c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10962,7 +10962,7 @@ distribution, coverage uniformity, strand specificity,
etc.")
`(#:configure-flags
,#~(list (string-append "-DSVM_LIBRARY="
#$(this-package-input "libsvm")
- "/lib/libsvm.so.2")
+ "/lib/libsvm.so")
(string-append "-DSVM_INCLUDE="
#$(this-package-input "libsvm")
"/include"))
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index c8e363f8ac..7c6fd79f6f 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -347,39 +347,40 @@ sparsely connected networks.")
(define-public libsvm
(package
(name "libsvm")
- (version "3.23")
+ (version "336")
(source
(origin
- (method url-fetch)
- (uri (string-append "https://www.csie.ntu.edu.tw/~cjlin/libsvm/";
- name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cjlin1/libsvm/";)
+ (commit (string-append "v" version))))
(sha256
- (base32 "0jpaq0rr92x38p4nk3gjan79ip67m6p80anb28z1d8601miysyi5"))))
+ (base32 "03ns6frhfdcyl661ws1yqbzsa6m8wrmba544vlacghry2kg88hn2"))))
(build-system gnu-build-system)
(arguments
- `(#:tests? #f ; no "check" target
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (add-after 'build 'build-lib
- (lambda _
- (invoke "make" "lib")))
- (replace 'install ; no ‘install’ target
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (bin (string-append out "/bin/"))
- (lib (string-append out "/lib/"))
- (inc (string-append out "/include/libsvm")))
- (mkdir-p bin)
- (for-each (lambda (file)
- (copy-file file (string-append bin file)))
- '("svm-train"
- "svm-predict"
- "svm-scale"))
- (mkdir-p lib)
- (install-file "libsvm.so.2" lib)
- (mkdir-p inc)
- (install-file "svm.h" inc)))))))
+ (list
+ #:tests? #f ;no "check" target
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (add-after 'build 'build-lib
+ (lambda _
+ (invoke "make" "lib")))
+ (replace 'install
+ ;no "install" target
+ (lambda _
+ (for-each (lambda (file)
+ (install-file file
+ (string-append #$output "/bin")))
+ '("svm-train" "svm-predict" "svm-scale"))
+ (install-file "libsvm.so.4"
+ (string-append #$output "/lib"))
+ (symlink (string-append #$output "/lib/libsvm.so.4")
+ (string-append #$output "/lib/libsvm.so"))
+ (install-file "svm.h"
+ (string-append #$output "/include/"
+ #$name)))))))
+ (native-inputs (list python-minimal-wrapper))
(home-page "https://www.csie.ntu.edu.tw/~cjlin/libsvm/";)
(synopsis "Library for Support Vector Machines")
(description
@@ -438,35 +439,20 @@ machine learning algorithms based on GPs.")
(license license:bsd-3)))
(define-public python-libsvm
- (package (inherit libsvm)
+ (package
+ (inherit libsvm)
(name "python-libsvm")
- (build-system gnu-build-system)
+ (build-system pyproject-build-system)
(arguments
- `(#:tests? #f ; no "check" target
- #:make-flags '("-C" "python")
- #:phases
- (modify-phases %standard-phases
- (delete 'configure)
- (replace
- 'install ; no ‘install’ target
- (lambda* (#:key inputs outputs #:allow-other-keys)
- (let ((site (string-append (assoc-ref outputs "out")
- "/lib/python"
- (string-take
- (string-take-right
- (assoc-ref inputs "python") 5) 3)
- "/site-packages/")))
- (substitute* "python/svm.py"
- (("../libsvm.so.2") "libsvm.so.2"))
- (mkdir-p site)
- (for-each (lambda (file)
- (copy-file file (string-append site (basename
file))))
- (find-files "python" "\\.py"))
- (copy-file "libsvm.so.2"
- (string-append site "libsvm.so.2")))
- #t)))))
- (inputs
- (list python))
+ (list
+ #:tests? #f ;no "check" target
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'chdir
+ (lambda _
+ (chdir "python"))))))
+ (native-inputs (list python-setuptools python-wheel))
+ (propagated-inputs (list libsvm python-scipy))
(synopsis "Python bindings of libSVM")))
(define-public python-mcfit
