guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit 8ee03e2a6094d7acf1324548bcf0528b7a522181
Author: Nicolas Graves <[email protected]>
AuthorDate: Wed Sep 24 22:11:21 2025 +0200
gnu: python-vireosnp: Update to 0.5.9-0.e365463.
* gnu/packages/bioinformatics.scm (python-vireosnp): Update to
0.5.9-0.e365463.
[source]: Switch to git-fetch.
[arguments]<#:phases>: Replace 'check phase.
[native-inputs]: Remove python-wheel.
Change-Id: I53fee681916b4c4a5ad483fdf589e8297864da7f
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 49 +++++++++++++++++++++++++++--------------
1 file changed, 32 insertions(+), 17 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e8fb0e2d5a..3607878714 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -25155,27 +25155,42 @@ interest.")
(license license:gpl3+))))
(define-public python-vireosnp
- (package
- (name "python-vireosnp")
- (version "0.5.7")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "vireoSNP" version))
- (sha256
- (base32 "02ybhzivsxwnb1axlgbs63wni1j27xajnkl4jw1ps5vmsz2l4b0d"))))
- (build-system pyproject-build-system)
- (propagated-inputs (list python-matplotlib python-numpy python-scipy))
- (native-inputs (list python-setuptools python-wheel))
- (home-page "https://github.com/huangyh09/vireoSNP";)
- (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
- (description
- "This package provides a deconvolution based on Single Nucleotide
+ (let ((commit "e3654633f7663732572c03c5dcf9fb00ec43b653")
+ (revision "0"))
+ (package
+ (name "python-vireosnp")
+ (version (git-version "0.5.9" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/huangyh09/vireoSNP";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1wd4llm54fvc1pc4nqfdc43g637gfx1f4z4aznvdr3biy9jksqza"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (replace 'check
+ (lambda* (#:key tests? #:allow-other-keys)
+ (if tests?
+ (with-directory-excursion "examples"
+ (invoke "bash" "demo.sh"))
+ (format #f "test suite not run.~%")))))))
+ (propagated-inputs (list python-matplotlib python-numpy python-scipy))
+ (native-inputs (list python-setuptools))
+ (home-page "https://github.com/huangyh09/vireoSNP";)
+ (synopsis "Deconvolution based on SNP for multiplexed scRNA-seq data")
+ (description
+ "This package provides a deconvolution based on Single Nucleotide
Position (SNP) for multiplexed scRNA-seq data. The name vireo stand for
Variational Inference for Reconstructing Ensemble Origin by expressed SNPs in
multiplexed scRNA-seq data and follows the clone identification from
single-cell data named @url{https://github.com/PMBio/cardelino, cardelino}.")
- (license license:asl2.0)))
+ (license license:asl2.0))))
(define-public ccwl
(package
