guix_mirror_bot pushed a commit to branch master
in repository guix.
commit a6075f65c8c3465d343868f6a639a693c72cc5be
Author: Hugo Buddelmeijer <[email protected]>
AuthorDate: Tue Sep 23 21:51:26 2025 +0200
gnu: python-taggd: Update to 0.4.0.
* gnu/packages/bioinformatics.scm (python-taggd): Update to 0.4.0.
[origin, homepage]: Change to "https://github.com/jfnavarro/taggd";
[source]: Remove out-dated snippet.
[arguments] <test-flags>: Reenable fixed test.
[propagated-inputs]: Add python-tqdm, python-aiofiles, python-dnaio,
python-types-aiofiles, and python-types-tqdm.
Change-Id: I8c1c445bdf1b463b9ffd16602001608a3c9d4fcd
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 23 +++++++++++------------
1 file changed, 11 insertions(+), 12 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5d218e6a69..3c2b5d4f5e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12165,26 +12165,19 @@ interpretation.")
(define-public python-taggd
(package
(name "python-taggd")
- (version "0.3.6")
+ (version "0.4.0")
(source (origin
(method git-fetch)
(uri (git-reference
- (url
"https://github.com/SpatialTranscriptomicsResearch/taggd";)
+ (url "https://github.com/jfnavarro/taggd";)
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
- "0j19ah81z7aqrdljah9hyarp91gvgbk63pz6fz3pdpksy1yqyi6k"))
- (modules '((guix build utils)))
- (snippet
- '(for-each delete-file
- (find-files "taggd" "\\.c$")))))
+ "17hi1vs1qwhxx8jnradnl9k471li6fjb6w5sljkpzjxy7rkxwb85"))))
(build-system pyproject-build-system)
(arguments
(list
- #:test-flags
- ;; AssertionError: 0 is not true : Running Normal BAM test failed.
- #~(list "-k" "not test_normal_bam_run")
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'remove-local-taggd
@@ -12193,10 +12186,16 @@ interpretation.")
;; taggd when running tests.
(delete-file-recursively "taggd"))))))
(propagated-inputs
- (list python-numpy python-pysam))
+ (list python-numpy
+ python-pysam
+ python-tqdm
+ python-aiofiles
+ python-dnaio
+ python-types-aiofiles
+ python-types-tqdm))
(native-inputs
(list python-cython python-pytest python-setuptools))
- (home-page "https://github.com/SpatialTranscriptomicsResearch/taggd";)
+ (home-page "https://github.com/jfnavarro/taggd";)
(synopsis "Genetic barcode demultiplexing")
(description "This package provides TagGD barcode demultiplexing utilities
for Spatial Transcriptomics data.")
