guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 6a9176642363088bc6c23a7809928671870d661a
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Wed Oct 1 23:21:21 2025 +0100
gnu: packages/astronomy: Sort.
This is the last bit of sorting for this module.
* gnu/packages/astronomy.scm (python-asdf-fits-schemas, python-pyavm)
(python-pysynphot, python-reproject, python-roman-datamodels): Sort
variables alphabetically.
Change-Id: Id63775688483e734300b003e55472e0bcec5a024
---
gnu/packages/astronomy.scm | 498 ++++++++++++++++++++++-----------------------
1 file changed, 249 insertions(+), 249 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 747c0ec199..76fd3962ff 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2286,6 +2286,47 @@ Users should not need to install this directly; instead,
install an
implementation package such as asdf-astropy.")
(license license:bsd-3))))
+(define-public python-asdf-fits-schemas
+ (hidden-package
+ ;; This package was never released and has been archived. The schemas in
+ ;; this package were never removed from and will continue to be maintained
+ ;; in <https://github.com/asdf-format/asdf-standard>.
+ (let ((commit "6321c0ae4e44c9a59ccf81a446f9d9e22fd42b55")
+ (revision "2"))
+ (package
+ (name "python-asdf-fits-schemas")
+ (version (git-version "0.0.1" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/asdf-format/asdf-fits-schemas";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "0p0m1sgnv9yqk0l0w15skvfshl47x0gc7lg6p2x83158hjyix5q6"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:tests? #f ; cycle with python-asdf
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
+ (native-inputs
+ (list python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-asdf-standard
+ python-importlib-resources))
+ (home-page "https://github.com/asdf-format/asdf-fits-schemas";)
+ (synopsis "ASDF schemas to support the FITS format")
+ (description
+ "This package provides ASDF schemas for validating FITS tags.")
+ (license license:bsd-3)))))
+
(define-public python-asdf-standard
(package
(name "python-asdf-standard")
@@ -6323,6 +6364,34 @@ position-frequency slice.")
(list python-setuptools
python-wheel)))))
+(define-public python-pyavm
+ (package
+ (name "python-pyavm")
+ (version "0.9.6")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "PyAVM" version))
+ (sha256
+ (base32 "0vgjqvddq4a5lnmg8msm7fwqs3r6fc748xzvnhyvc387h0z8pdxk"))))
+ (build-system pyproject-build-system)
+ (native-inputs
+ (list python-pillow
+ python-pytest
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-numpy))
+ (home-page "https://astrofrog.github.io/pyavm/";)
+ (synopsis "Simple pure-python AVM meta-data handling")
+ (description
+ "PyAVM is a module to represent, read, and write metadata following the
+@acronym{AVM, Astronomy Visualization Metadata} standard provided by
+@url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.")
+ (license license:expat)))
+
(define-public python-pycpl
(package
(name "python-pycpl")
@@ -6886,6 +6955,58 @@ experiments. It is a large refactor of
memory usage, improving performance and run in parallel with MPI.")
(license license:bsd-3)))
+(define-public python-pysynphot
+ ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
+ ;; time and it failed to build with python-astropy 6.0.0, use the latest
+ ;; upstream commit for now.
+ (let ((commit "54e9e2a624910c4d177ca70f8e9fb8110c8fae5b")
+ (revision "0"))
+ (package
+ (name "python-pysynphot")
+ (version (git-version "2.0.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/spacetelescope/pysynphot";)
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "09sivpfqilk86zp8k5wmrs4g48m4kypn34jcy95y5h4ygbn5zbzy"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'build 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "2.0.0")))
+ (add-before 'check 'set-env-data-path
+ (lambda _
+ (setenv "PYSYN_CDBS" (string-append #$output "/crds")))))))
+ (native-inputs
+ (list python-pytest
+ python-pytest-remotedata
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-astropy
+ python-beautifulsoup4
+ python-numpy
+ python-pytest-astropy-header
+ python-six))
+ (home-page "https://github.com/spacetelescope/pysynphot";)
+ (synopsis "Python Synthetic Photometry Utilities")
+ (description
+ "Astrolib PySynphot (hereafter referred to only as pysynphot) is an
+object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in
+IRAF. @code{pysynphot} simulates photometric data and spectra as they are
+observed with the Hubble Space Telescope (HST). Passbands for standard
+photometric systems are available, and users can incorporate their own filters,
+spectra, and data.")
+ (license license:bsd-3))))
+
(define-public python-pyvo
(package
(name "python-pyvo")
@@ -7227,6 +7348,134 @@ solar physics.")
PSF} describing how the optical system spreads light from sources.")
(license license:expat)))
+(define-public python-reproject
+ (package
+ (name "python-reproject")
+ (version "0.14.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "reproject" version))
+ (sha256
+ (base32 "0yg5dga054xdwsx75q204h04gmrw0mgayc74l4rpymcbkckymj2k"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ #~(list "--arraydiff"
+ "--arraydiff-default-format=fits"
+ "--numprocesses" (number->string (parallel-job-count))
+ "--pyargs" "reproject")
+ #:phases
+ #~(modify-phases %standard-phases
+ ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
+ ;; for some unknown reason, which caused the package to fail to
+ ;; build. It is being recreated based on that commit.
+ ;; TODO: Check how to implement it in python-build-system.
+ (add-after 'unpack 'create-setup.py
+ (lambda _
+ (call-with-output-file "setup.py"
+ (lambda (port)
+ (format port "from setuptools import setup
+from extension_helpers import get_extensions
+setup(ext_modules=get_extensions())")))))
+ (add-before 'install 'writable-compiler
+ (lambda _
+ (make-file-writable "reproject/_compiler.c")))
+ (add-before 'check 'writable-compiler
+ (lambda _
+ (make-file-writable "reproject/_compiler.c")))
+ (add-before 'check 'prepare-test-environment
+ (lambda _
+ (setenv "HOME" "/tmp")
+ ;; Cython extensions have to be built before running the tests.
+ (invoke "python" "setup.py" "build_ext" "--inplace"))))))
+ (propagated-inputs
+ (list python-asdf
+ python-astropy
+ python-astropy-healpix
+ python-cloudpickle
+ python-dask
+ python-fsspec
+ python-gwcs
+ python-numpy
+ python-pyvo
+ python-scipy
+ python-shapely
+ python-zarr))
+ (native-inputs
+ (list python-cython-3
+ python-extension-helpers
+ python-asdf
+ python-gwcs
+ python-pytest-astropy
+ python-pytest-xdist
+ python-pyvo
+ ;; python-sunpy ; circular dependencies, test optional
+ python-setuptools-scm
+ python-wheel))
+ (home-page "https://reproject.readthedocs.io";)
+ (synopsis "Astronomical image reprojection in Python")
+ (description
+ "This package provides a functionality to reproject astronomical images
using
+various techniques via a uniform interface, where reprojection is the
+re-gridding of images from one world coordinate system to another e.g.
+changing the pixel resolution, orientation, coordinate system.")
+ (license license:bsd-3)))
+
+(define-public python-roman-datamodels
+ (package
+ (name "python-roman-datamodels")
+ (version "0.27.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "roman_datamodels" version))
+ (sha256
+ (base32 "1631jpv7mcrcka6bfxp04ih43wlm9pmqsqxckqyv6y9jgsipjxy3"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; tests: 4185 passed, 1 skipped, 1 xfailed
+ #:test-flags
+ #~(list "--numprocesses" (number->string (parallel-job-count)))
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'set-env
+ (lambda _
+ (setenv "HOME" "/tmp"))))))
+ (native-inputs
+ (list python-pandas
+ python-pytest
+ python-pytest-doctestplus
+ python-pytest-env
+ python-pytest-xdist
+ python-setuptools
+ python-setuptools-scm
+ python-wheel))
+ (propagated-inputs
+ (list python-asdf
+ python-asdf-astropy
+ python-asdf-standard
+ python-astropy
+ python-gwcs
+ python-lz4
+ python-numpy
+ python-pyarrow
+ python-rad))
+ (home-page "https://github.com/spacetelescope/roman_datamodels";)
+ (synopsis "Roman Datamodels Support")
+ (description
+ "This package provides a Python package of Roman Datamodels for the
+calibration pipelines started with the @acronym{JWST, James Webb Space
+Telescope} calibration pipelines. The goal for the JWST pipelines was
motivated
+primarily by the need to support FITS data files, specifically with isolating
+the details of where metadata and data were located in the FITS file from the
+representation of the same items within the Python code. That is not a concern
+for Roman since FITS format data files will not be used by the Roman
calibration
+pipelines.")
+ (license license:bsd-3)))
+
(define-public python-romancal
(package
(name "python-romancal")
@@ -7917,109 +8166,6 @@ instruments.")
(license (list license:bsd-3 ; licenses/LICENSE.rst, same as
python-astropy
license:expat)))) ; licenses/KOSMOS_LICENSE
-(define-public python-pyavm
- (package
- (name "python-pyavm")
- (version "0.9.6")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "PyAVM" version))
- (sha256
- (base32 "0vgjqvddq4a5lnmg8msm7fwqs3r6fc748xzvnhyvc387h0z8pdxk"))))
- (build-system pyproject-build-system)
- (native-inputs
- (list python-pillow
- python-pytest
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-numpy))
- (home-page "https://astrofrog.github.io/pyavm/";)
- (synopsis "Simple pure-python AVM meta-data handling")
- (description
- "PyAVM is a module to represent, read, and write metadata following the
-@acronym{AVM, Astronomy Visualization Metadata} standard provided by
-@url{https://www.virtualastronomy.org/avm_metadata.php, vamp} project.")
- (license license:expat)))
-
-(define-public python-reproject
- (package
- (name "python-reproject")
- (version "0.14.1")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "reproject" version))
- (sha256
- (base32 "0yg5dga054xdwsx75q204h04gmrw0mgayc74l4rpymcbkckymj2k"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:test-flags
- #~(list "--arraydiff"
- "--arraydiff-default-format=fits"
- "--numprocesses" (number->string (parallel-job-count))
- "--pyargs" "reproject")
- #:phases
- #~(modify-phases %standard-phases
- ;; setup.py was removed in a659a260bdd7635cddc8f33c4ea04a3b6d8c1f84
- ;; for some unknown reason, which caused the package to fail to
- ;; build. It is being recreated based on that commit.
- ;; TODO: Check how to implement it in python-build-system.
- (add-after 'unpack 'create-setup.py
- (lambda _
- (call-with-output-file "setup.py"
- (lambda (port)
- (format port "from setuptools import setup
-from extension_helpers import get_extensions
-setup(ext_modules=get_extensions())")))))
- (add-before 'install 'writable-compiler
- (lambda _
- (make-file-writable "reproject/_compiler.c")))
- (add-before 'check 'writable-compiler
- (lambda _
- (make-file-writable "reproject/_compiler.c")))
- (add-before 'check 'prepare-test-environment
- (lambda _
- (setenv "HOME" "/tmp")
- ;; Cython extensions have to be built before running the tests.
- (invoke "python" "setup.py" "build_ext" "--inplace"))))))
- (propagated-inputs
- (list python-asdf
- python-astropy
- python-astropy-healpix
- python-cloudpickle
- python-dask
- python-fsspec
- python-gwcs
- python-numpy
- python-pyvo
- python-scipy
- python-shapely
- python-zarr))
- (native-inputs
- (list python-cython-3
- python-extension-helpers
- python-asdf
- python-gwcs
- python-pytest-astropy
- python-pytest-xdist
- python-pyvo
- ;; python-sunpy ; circular dependencies, test optional
- python-setuptools-scm
- python-wheel))
- (home-page "https://reproject.readthedocs.io";)
- (synopsis "Astronomical image reprojection in Python")
- (description
- "This package provides a functionality to reproject astronomical images
using
-various techniques via a uniform interface, where reprojection is the
-re-gridding of images from one world coordinate system to another e.g.
-changing the pixel resolution, orientation, coordinate system.")
- (license license:bsd-3)))
-
(define-public python-spectral-cube
(package
(name "python-spectral-cube")
@@ -8538,152 +8684,6 @@ science instruments plus the fine guidance sensor,
including both direct
imaging, coronagraphic, and spectroscopic modes.")
(license license:bsd-3)))
-(define-public python-pysynphot
- ;; XXX: 2.0.0 was released in 2021 there are a lot of changes since that
- ;; time and it failed to build with python-astropy 6.0.0, use the latest
- ;; upstream commit for now.
- (let ((commit "54e9e2a624910c4d177ca70f8e9fb8110c8fae5b")
- (revision "0"))
- (package
- (name "python-pysynphot")
- (version (git-version "2.0.0" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/spacetelescope/pysynphot";)
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "09sivpfqilk86zp8k5wmrs4g48m4kypn34jcy95y5h4ygbn5zbzy"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'build 'set-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "2.0.0")))
- (add-before 'check 'set-env-data-path
- (lambda _
- (setenv "PYSYN_CDBS" (string-append #$output "/crds")))))))
- (native-inputs
- (list python-pytest
- python-pytest-remotedata
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-astropy
- python-beautifulsoup4
- python-numpy
- python-pytest-astropy-header
- python-six))
- (home-page "https://github.com/spacetelescope/pysynphot";)
- (synopsis "Python Synthetic Photometry Utilities")
- (description
- "Astrolib PySynphot (hereafter referred to only as pysynphot) is an
-object-oriented replacement for STSDAS SYNPHOT synthetic photometry package in
-IRAF. @code{pysynphot} simulates photometric data and spectra as they are
-observed with the Hubble Space Telescope (HST). Passbands for standard
-photometric systems are available, and users can incorporate their own filters,
-spectra, and data.")
- (license license:bsd-3))))
-
-(define-public python-asdf-fits-schemas
- (hidden-package
- ;; This package was never released and has been archived. The schemas in
- ;; this package were never removed from and will continue to be maintained
- ;; in <https://github.com/asdf-format/asdf-standard>.
- (let ((commit "6321c0ae4e44c9a59ccf81a446f9d9e22fd42b55")
- (revision "2"))
- (package
- (name "python-asdf-fits-schemas")
- (version (git-version "0.0.1" revision commit))
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/asdf-format/asdf-fits-schemas";)
- (commit commit)))
- (file-name (git-file-name name version))
- (sha256
- (base32 "0p0m1sgnv9yqk0l0w15skvfshl47x0gc7lg6p2x83158hjyix5q6"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- #:tests? #f ; cycle with python-asdf
- #:phases
- #~(modify-phases %standard-phases
- (add-before 'build 'set-version
- (lambda _
- (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" "0.0.1"))))))
- (native-inputs
- (list python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-asdf-standard
- python-importlib-resources))
- (home-page "https://github.com/asdf-format/asdf-fits-schemas";)
- (synopsis "ASDF schemas to support the FITS format")
- (description
- "This package provides ASDF schemas for validating FITS tags.")
- (license license:bsd-3)))))
-
-(define-public python-roman-datamodels
- (package
- (name "python-roman-datamodels")
- (version "0.27.0")
- (source
- (origin
- (method url-fetch)
- (uri (pypi-uri "roman_datamodels" version))
- (sha256
- (base32 "1631jpv7mcrcka6bfxp04ih43wlm9pmqsqxckqyv6y9jgsipjxy3"))))
- (build-system pyproject-build-system)
- (arguments
- (list
- ;; tests: 4185 passed, 1 skipped, 1 xfailed
- #:test-flags
- #~(list "--numprocesses" (number->string (parallel-job-count)))
- #:phases
- #~(modify-phases %standard-phases
- (add-after 'unpack 'set-env
- (lambda _
- (setenv "HOME" "/tmp"))))))
- (native-inputs
- (list python-pandas
- python-pytest
- python-pytest-doctestplus
- python-pytest-env
- python-pytest-xdist
- python-setuptools
- python-setuptools-scm
- python-wheel))
- (propagated-inputs
- (list python-asdf
- python-asdf-astropy
- python-asdf-standard
- python-astropy
- python-gwcs
- python-lz4
- python-numpy
- python-pyarrow
- python-rad))
- (home-page "https://github.com/spacetelescope/roman_datamodels";)
- (synopsis "Roman Datamodels Support")
- (description
- "This package provides a Python package of Roman Datamodels for the
-calibration pipelines started with the @acronym{JWST, James Webb Space
-Telescope} calibration pipelines. The goal for the JWST pipelines was
motivated
-primarily by the need to support FITS data files, specifically with isolating
-the details of where metadata and data were located in the FITS file from the
-representation of the same items within the Python code. That is not a concern
-for Roman since FITS format data files will not be used by the Roman
calibration
-pipelines.")
- (license license:bsd-3)))
-
(define-public python-stsci-image
(package
(name "python-stsci-image")
