guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 521e1bd140cbb5aed07548b3a32aa2fa12ba889e
Author: Hugo Buddelmeijer <[email protected]>
AuthorDate: Fri Sep 26 22:12:08 2025 +0200
gnu: python-pyjanitor: Fix build.
* gnu/packages/python-science.scm (python-pyjanitor): Fix build.
[propagated-inputs]: Add python-requests.
[native-inputs]: Remove python-wheel.
[arguments] <#:test-flags>: Disable failing test.
Change-Id: I74b40149a3b87f0e748d79be2aae9978fa18de52
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/python-science.scm | 40 ++++++++++++++++++++++++----------------
1 file changed, 24 insertions(+), 16 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 7b4c7cdfe5..2065171b90 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -3930,19 +3930,25 @@ production-critical data pipelines or reproducible
research settings. With
;; marked turtle can be skipped using "-m" "not turtle".
(arguments
(list
- #:test-flags '(list
- "-n" (number->string (parallel-job-count))
- ;; Tries to connect to the internet.
- "-k" (string-append "not test_is_connected"
- ;; Test files are not included
- " and not
test_read_commandline_bad_cmd")
- ;; Test files are not included
- "--ignore=tests/io/test_read_csvs.py"
- ;; Polars has not been packaged yet.
- "--ignore=tests/polars"
- ;; PySpark has not been packaged yet.
- "--ignore=tests/spark/functions/test_clean_names_spark.py"
-
"--ignore=tests/spark/functions/test_update_where_spark.py")
+ ;; tests: 1042 passed, 2 skipped, 2 deselected, 45 xfailed, 6 xpassed,
+ ;; 735 warnings
+ #:test-flags
+ ;; The tests take quite long, so consider adding the "-n" line and
+ ;; adding python-pytest-xdist to the native-inputs when testing.
+ ;; However, the tests are not deterministic when ran with -n, so
+ ;; disable again before committing.
+ #~(list ;; "-n" (number->string (parallel-job-count))
+ ;; Test files are not included.
+ "--ignore=tests/io/test_read_csvs.py"
+ ;; Polars has not been packaged yet.
+ "--ignore=tests/polars"
+ ;; PySpark has not been packaged yet.
+ "--ignore=tests/spark/functions/test_clean_names_spark.py"
+ "--ignore=tests/spark/functions/test_update_where_spark.py"
+ ;; Tries to connect to the internet.
+ "-k" (string-append "not test_is_connected"
+ ;; Test files are not included.
+ " and not test_read_commandline_bad_cmd"))
#:phases
#~(modify-phases %standard-phases
(add-before 'check 'set-env-ci
@@ -3950,20 +3956,22 @@ production-critical data pipelines or reproducible
research settings. With
;; Some tests are skipped if the JANITOR_CI_MACHINE
;; variable is not set.
(setenv "JANITOR_CI_MACHINE" "1"))))))
+ ;; TODO: Remove python-requests and inject its target data to make the
+ ;; package behaviour reproducible.
(propagated-inputs (list python-multipledispatch
python-natsort
python-pandas-flavor
+ python-requests
python-scipy
;; Optional imports.
python-biopython ;biology submodule
python-unyt)) ;engineering submodule
(native-inputs (list python-pytest
- python-pytest-xdist
+ ;;python-pytest-xdist ;only for -n when testing
+ python-setuptools
;; Optional imports. We do not propagate them due to
;; their size.
python-numba ;speedup of joins
- python-setuptools
- python-wheel
rdkit)) ;chemistry submodule
(home-page "https://github.com/pyjanitor-devs/pyjanitor";)
(synopsis "Tools for cleaning and transforming pandas DataFrames")
