guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 389e9019a754d4a4151634d865fa0780c5f85b9c
Author: Nicolas Graves <[email protected]>
AuthorDate: Sun Oct 26 01:24:14 2025 +0200
gnu: python-illumina-utils: Update to 2.13.
* gnu/packages/bioinformatics.scm (python-illumina-utils): Update to 2.13.
<#:phases>: In phase 'adjust-requirements, add python-levenshtein patch.
Change-Id: I03cafaea1f73206bb5cfc887b9b4d0df7d959fca
Signed-off-by: Sharlatan Hellseher <[email protected]>
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++----------
1 file changed, 22 insertions(+), 10 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 013354c456..4e7950c32f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8134,17 +8134,29 @@ exploration.")
(define-public python-illumina-utils
(package
(name "python-illumina-utils")
- (version "2.12")
- (source (origin
- (method url-fetch)
- (uri (pypi-uri "illumina-utils" version))
- (sha256
- (base32
- "0z9g0prj7pmgl5z4vdpxv3v30grzhc194801qnf0wqzgy7w3aj2s"))))
+ (version "2.13")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/meren/illumina-utils";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "15cyb5slw07va5siq8nzc0nwcgnvx1hmqqrgwk2v0fxy250fp9v4"))))
(build-system pyproject-build-system)
- (arguments (list #:tests? #false)) ;there are none
- (propagated-inputs (list python-matplotlib python-numpy
python-levenshtein))
- (native-inputs (list python-setuptools python-wheel python-pip))
+ (arguments
+ (list
+ #:tests? #f ;there are none
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-after 'unpack 'adjust-requirements
+ (lambda _
+ (substitute* "requirements.txt"
+ (("python-Levenshtein")
+ "levenshtein")))))))
+ (propagated-inputs (list python-levenshtein python-matplotlib
python-numpy))
+ (native-inputs (list python-pip python-setuptools))
(home-page "https://github.com/meren/illumina-utils";)
(synopsis "Library and scripts to work with Illumina paired-end data")
(description
