guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 3b6d367a7a4020effa2f0dd1f1ef23ec71fff86d
Author: Simon Tournier <[email protected]>
AuthorDate: Tue Oct 28 16:45:46 2025 +0100
gnu: r-chipkernels: Adjust [email protected] and GCC@14.
* gnu/packages/bioinformatics.scm (r-chipkernels)[arguments]: Add phase that
replaces C-level facilities from [email protected].
Change-Id: Iac58b4d871160b4cbfd8b71d771c2f2fcf174240
---
gnu/packages/bioinformatics.scm | 15 +++++++++++++++
1 file changed, 15 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8cf22341e4..279eea80c4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -15312,6 +15312,21 @@ characteristic tag shift values in these assays.")
(base32
"14bj5qhjm1hsm9ay561nfbqi9wxsa7y487df2idsaaf6z10nw4v0"))))
(build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ #~(modify-phases %standard-phases
+ (add-before 'install 'fix-r-4.5.0
+ ;; Changes in R 4.5.0: C-Level Facilities.
+ ;; Strict R headers are now the default. This removes the legacy
+ ;; definitions of PI, Calloc, Realloc and Free: use M_PI,
+ ;; R_Calloc, R_Realloc or R_Free instead.
+ ;; https://cran.r-project.org/doc/manuals/r-release/NEWS.html
+ (lambda _
+ (substitute* "src/hamming_distance.c"
+ (("Calloc") "R_Calloc")
+ (("Free") "R_Free")
+ (("Realloc") "R_Realloc")))))))
(propagated-inputs
(list r-iranges
r-xvector
