guix_mirror_bot pushed a commit to branch astro-updates in repository guix.
commit d249819a8362bdeaae81a47691c8b5d502caac65 Author: Sharlatan Hellseher <[email protected]> AuthorDate: Tue Nov 11 23:17:32 2025 +0000 gnu: Add python-astrodata. * gnu/packages/astronomy.scm (python-astrodata): New variable. Change-Id: If3552abcddda7f44ec620778e498383894053fda --- gnu/packages/astronomy.scm | 120 +++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 120 insertions(+) diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 89f0aec0b8..55b3b45017 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -2731,6 +2731,126 @@ a path (for moving targets) and combining cutouts @end itemize") (license license:bsd-3))) +(define-public python-astrodata + (package + (name "python-astrodata") + (version "2.10.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/GeminiDRSoftware/astrodata";) + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "141qymnirjlrbjzl26wx2dvrr0glva8q74cwxi575a29aa0byrhv")))) + (build-system pyproject-build-system) + (arguments + (list + ;; tests: 985 passed, 7 skipped, 58 deselected + #:test-flags + ;; Tests depend on unpackaged DRAGON's module "gemini_instruments". + #~(list "--ignore=tests/integration/" + ;; Access to https://archive.gemini.edu/file is required to + ;; download test data. + "--deselect=tests/unit/test_provenance.py::test_convert_provhistory" + #$@(map (lambda (test) (string-append "--deselect=" + "tests/unit/" + "test_fits.py::" + test)) + (list "test_attributes" + "test_can_add_and_del_extension" + "test_copy" + "test_crop" + "test_crop_ext" + "test_do_arith_and_retain_features" + "test_extver3" + "test_from_hdulist" + "test_header" + "test_header_collection" + "test_paths" + "test_phu" + "test_read_no_extensions" + "test_set_a_keyword_on_phu_deprecated" + "test_slice" + "test_slice_data" + "test_slice_multiple" + "test_slice_single_element")) + #$@(map (lambda (test) (string-append "--deselect=" + "tests/unit/" + "test_object_construction.py::" + test)) + (list "test_append_array_to_extension_with_arbitrary_name" + "test_append_array_to_extension_with_name_sci" + "test_append_array_to_root_no_name" + "test_append_array_to_root_with_arbitrary_name" + "test_append_array_to_root_with_name_sci" + "test_append_dq_var" + "test_append_nddata_to_root_no_name" + "test_append_nddata_to_root_with_arbitrary_name" + "test_append_non_single_slice" + "test_append_single_slice" + "test_append_slice_to_extension" + "test_append_whole_instance" + "test_can_read_data" + "test_delete_arbitrary_attribute_from_ad" + "test_delete_named_associated_extension")) + #$@(map (lambda (test) (string-append "--deselect=" + "tests/unit/" + "test_testing.py::" + test)) + (list "test_ADCompare_header_matching" + "test_ADCompare_header_matching_flip" + "test_ADCompare_init" + "test_ADCompare_missing_refcat" + "test_ADCompare_numext" + "test_ADCompare_run_comparison" + "test_ADCompare_wcs" + "test_ad_compare" + "test_download_file_path_subpath" + "test_download_from_archive_None_sub_path" + "test_download_memory_leaks" + "test_warning_if_no_cache_path")) + + #$@(map (lambda (test) (string-append "--deselect=" + "tests/unit/" + "test_wcs.py::" + test)) + (list "test_gwcs_creation" + "test_loglinear_axis" + "test_reading_and_writing_sliced_image" + "test_remove_unused_world_axis")) + ;; assert 1 == 0 + "-k" (string-append "not test_script_executes[script0-]" + " and not test_script_executes[script1-]")))) + (native-inputs + (list python-poetry-core + python-objgraph + python-pytest + python-pytest-doctestplus)) + (propagated-inputs + (list python-asdf-3 + python-astropy-6 + python-gwcs-0.21 + python-jsonschema + python-numpy)) + (home-page "https://github.com/GeminiDRSoftware/astrodata";) + (synopsis "Managing astronomical data through a uniform interface") + (description + "@code{astrodata} is a package for managing astronomical data through a +uniform interface. It is designed to be used with the +@url{https://www.astropy.org/, Astropy package}. @code{astrodata} was created +for use as part of the @url{https://github.com/GeminiDRSoftware/DRAGONS, +DRAGONS} data reduction pipeline, but it is now implemented to be useful for +any astronomical data reduction or analysis project. + +Unlike managing files using the @code{astropy.io.fits} package alone, +@code{astrodata} is designed to be extendible to any data format, and to +parse, respond to, and store metadata in a consistent, intentional way. This +makes it especially useful for managing data from multiple instruments, +telescopes, and data generation utilities.") + (license license:bsd-3))) + (define-public python-astrodendro (package (name "python-astrodendro")
