guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 220329e73cb3c6799616dc33eabb23d68aa22fa8
Author: Andreas Enge <[email protected]>
AuthorDate: Mon Nov 24 11:10:04 2025 +0100
gnu: Remove blasr.
* gnu/packages/bioinformatics.scm (blasr): Delete variable.
Change-Id: I7c10109d4a168c868f1a7c8587584ad738378506
---
gnu/packages/bioinformatics.scm | 41 -----------------------------------------
1 file changed, 41 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0e9c9f5fe4..5f03f11e97 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2104,47 +2104,6 @@ PacBio genomic sequences. This library contains three
sub-libraries: pbdata,
hdf and alignment.")
(license license:bsd-3)))
-(define-public blasr
- (package
- (name "blasr")
- (version "5.3.5")
- (source (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/PacificBiosciences/blasr";)
- (commit version)))
- (file-name (git-file-name name version))
- (sha256
- (base32
- "0axyd06gn2xa0p0k76fihsbxpfxvhlb18jn6bf97c0ii58r1wc0k"))))
- (build-system meson-build-system)
- (arguments
- `(#:phases
- (modify-phases %standard-phases
- (add-after 'unpack 'link-with-hdf5
- (lambda* (#:key inputs #:allow-other-keys)
- (let ((hdf5 (assoc-ref inputs "hdf5")))
- (substitute* "meson.build"
- (("blasr_deps = \\[" m)
- (string-append
- m
- (format #f "cpp.find_library('hdf5', dirs : '~a'), \
-cpp.find_library('hdf5_cpp', dirs : '~a'), "
- hdf5 hdf5))))))))
- ;; Tests require "cram" executable, which is not packaged.
- #:tests? #f
- #:configure-flags '("-Dtests=false")))
- (inputs
- (list boost blasr-libcpp hdf5 pbbam zlib))
- (native-inputs
- (list pkg-config))
- (home-page (string-append "https://web.archive.org/web/20210813124135/";
- "https://github.com/PacificBiosciences/blasr";))
- (synopsis "PacBio long read aligner")
- (description
- "Blasr is a genomic sequence aligner for processing PacBio long reads.")
- (license license:bsd-3)))
-
(define-public randfold
(package
(name "randfold")
