guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 68fc0cf2019d64a0db49a1b05eee307d96994e7a
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:50:49 2025 +0100
gnu: r-biodb: Update to 1.18.0.
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.18.0.
[propagated-inputs]: Remove r-biocfilecache, r-git2r, and r-rcurl; add
r-fscache,
r-sched, and r-sqlq.
Change-Id: I9441495e575556a6f007fd23e69fdd0d5ac3d86a
---
gnu/packages/bioconductor.scm | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e765f9bffc..bac16f8c5c 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28131,14 +28131,14 @@ the Bioconductor project.")
(define-public r-biodb
(package
(name "r-biodb")
- (version "1.16.0")
+ (version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "biodb" version))
(sha256
(base32
- "1xja9fl4yskqj2b51smddnpqgzi5i3w4ap18rwlpw9ci07rafyk5"))))
+ "0462420y1pz1h09kd3bgwz9jazaqd4yzwz5815x438lfsdj5vxvv"))))
(properties `((upstream-name . "biodb")))
(build-system r-build-system)
;; 83 tests fail; 1025 pass. Some of the failing tests attempt to
@@ -28147,9 +28147,8 @@ the Bioconductor project.")
;; all.
(arguments (list #:tests? #false))
(propagated-inputs
- (list r-biocfilecache
- r-chk
- r-git2r
+ (list r-chk
+ r-fscache
r-jsonlite
r-lgr
r-lifecycle
@@ -28159,8 +28158,9 @@ the Bioconductor project.")
r-r6
r-rappdirs
r-rcpp
- r-rcurl
r-rsqlite
+ r-sched
+ r-sqlq
r-stringr
r-testthat
r-withr
