guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 598f3e19450d3f063c1affe6636fec67765f5f2d
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Tue Nov 25 13:50:45 2025 +0100
gnu: r-bgeecall: Update to 1.26.0.
* gnu/packages/bioconductor.scm (r-bgeecall): Update to 1.26.0.
[propagated-inputs]: Remove r-biomart; add r-annotationdbi, r-curl,
r-ggplot2, r-iranges,
r-rcurl, r-readr, r-rsqlite, r-scales, r-spatstat-univar, and
r-stringr.
Change-Id: I7e4d779eb12bbbd69578c096053bd3dd4f6f74d9
---
gnu/packages/bioconductor.scm | 16 +++++++++++++---
1 file changed, 13 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 3af1a4e403..ef9a2fb7b7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -27523,14 +27523,14 @@ real numbers.")
(define-public r-bgeecall
(package
(name "r-bgeecall")
- (version "1.24.0")
+ (version "1.26.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BgeeCall" version))
(sha256
(base32
- "0fjqwnaq26dzca4n3d7nsq8psim2k8vq6l6gdz11psf805k60hdl"))))
+ "1ql6id4l1qchavywbarj0c5vc8j7ars34br9wb4s66is68bb688p"))))
(properties
'((upstream-name . "BgeeCall")
(updater-extra-propagated-inputs . ("kallisto"))))
@@ -27539,16 +27539,26 @@ real numbers.")
(build-system r-build-system)
(propagated-inputs
(list kallisto
- r-biomart
+ r-annotationdbi
r-biostrings
+ r-curl
r-data-table
r-dplyr
r-genomicfeatures
+ r-ggplot2
+ r-iranges
r-jsonlite
+ r-rcurl
+ r-readr
r-rhdf5
r-rslurm
+ r-rsqlite
r-rtracklayer
+ r-scales
+ r-sjmisc
r-sjmisc
+ r-spatstat-univar
+ r-stringr
r-txdbmaker
r-tximport))
(native-inputs (list r-annotationhub r-httr r-knitr r-testthat))
