111/168: gnu: python-pyvo: Update to 1.8.

[guix-commits]

guix_mirror_bot pushed a commit to branch master
in repository guix.

commit 7b2c0c8a6623cddf8b74ff3528ae0a2fc9e0b39c
Author: Sharlatan Hellseher <sharlata...@gmail.com>
AuthorDate: Thu Nov 20 00:33:47 2025 +0000

    gnu: python-pyvo: Update to 1.8.
    
    * gnu/packages/astronomy.scm (python-pyvo): Update to 1.8.
    [source]: Switch to git-fetch.
    [arguments] <test-flags>: Enable all test.
    <phases>: Add 'set-version, 'include-package-data, and 'post-check.
    
    Change-Id: Iecaf3df03989ace2e76f35d7a3960b3b3c9bb31a
---
 gnu/packages/astronomy.scm | 41 ++++++++++++++++++++++++++++-------------
 1 file changed, 28 insertions(+), 13 deletions(-)

diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 928b28f0e6..7adaa803df 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -7289,26 +7289,41 @@ spectra, and data.")
 (define-public python-pyvo
   (package
     (name "python-pyvo")
-    (version "1.7.1")
+    (version "1.8")
     (source
      (origin
-       (method url-fetch)
-       (uri (pypi-uri "pyvo" version))
+       (method git-fetch)
+       (uri (git-reference
+              (url "https://github.com/astropy/pyvo";)
+              (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "1zr1vwcpypr6hr9h02gprchrhcah1vffcxjvqg9xl2yxj48qzpa1"))))
+        (base32 "0ks1542i85y042yny3ka6gsrgy7pyv0xdaclirmvqrkakikhv70b"))))
     (build-system pyproject-build-system)
     (arguments
      (list
+      ;; tests: 430 passed, 56 skipped, 1 xfailed
       #:test-flags
-      #~(list "--pyargs" "pyvo"
-              ;; XXX: Some data file was not copied in install phase:
-              ;; urllib.error.URLError: <urlopen error [Errno 2] No such file
-              ;; or directory
-              ;; 
<.../lib/python3.11/site-packages/pyvo/mivot/writer/mivot-v1.xsd>.
-              "-k" (string-join
-                    (list "not test_all_properties"
-                          "test_extraction_from_votable_header")
-                    " and not "))))
+      #~(list "--pyargs" "pyvo")
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-before 'build 'set-version
+            (lambda _
+              (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
+          (add-after 'install 'include-package-data
+            ;; FIXME: Check why pyproject-build-system ignores coping some
+            ;; package data files during build/install phases.
+            (lambda* (#:key inputs outputs #:allow-other-keys)
+              (for-each
+               (lambda (file)
+                 (install-file file
+                            (string-append (site-packages inputs outputs)
+                                           "/pyvo/mivot/writer/")))
+               (find-files "pyvo/mivot/writer" "\\.xsd$"))))
+          (add-before 'check 'post-check
+            (lambda _
+              (for-each delete-file-recursively
+                        (find-files #$output "__pycache__" #:directories? 
#t)))))))
     (native-inputs
      (list python-pytest-astropy
            python-pytest-doctestplus