guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 64d05da7b1ad2c1c3efc13b51518ffe7fdf96d00
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Wed Nov 19 22:13:26 2025 +0000
gnu: python-specreduce: Update to 1.7.0.
* gnu/packages/astronomy.scm (python-specreduce): Update to 1.7.0.
[source]: Switch to git-fetch providing test data.
[arguments] <tests?>: Enable.
<test-flags>: Skip one test.
<phases>: Add 'set-version, and 'relax-requirements.
[propagated-inputs]: Remove python-specutils; add python-matplotlib and
python-specutils-1.9.
[native-inputs]: Remove python-wheel; add nss-certs-for-test,
python-pypeit-minimal, python-pytest, python-pytest-mock, and
python-setuptools.
(python-specutils-1.9): New variable.
Change-Id: I7d1197aa9ea88778fd32684aeb190cb1d646539a
---
gnu/packages/astronomy.scm | 76 ++++++++++++++++++++++++++++++++--------------
1 file changed, 53 insertions(+), 23 deletions(-)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 45d857a792..c876a40f78 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -8488,45 +8488,57 @@ Computing Cluster, HPCC}
(define-public python-specreduce
(package
(name "python-specreduce")
- (version "1.6.0")
+ (version "1.7.0")
(source
(origin
- (method url-fetch)
- (uri (pypi-uri "specreduce" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/astropy/specreduce";)
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
- (base32 "096hkb94laqnaz5jl4ggw0w75lhp3dz1562pdr26kk510ridv744"))))
+ (base32 "0ldl8g182jdjbb8inah2h7f5i8n2frh4sllqd9l6zp09ylq4s9rs"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; 21 failed, 55 passed, 24 skipped, 4 errors
- ;;
- ;; FIXME: More than a half tests are skipped or failed, check why.
- #:tests? #f
+ ;; tests: 104 passed, 24 skipped, 1 deselected
#:test-flags
- ;; TODO: Try to link some test data availale in
- ;; specification-specreduce-data package.
- #~(list "-k" (string-append
- "not specreduce.calibration_data.get_pypeit_data_path"
- " and not
specreduce.calibration_data.get_reference_file_path"))
+ #~(list "--pyargs" "specreduce"
+ ;; See: <https://github.com/astropy/specreduce/issues/292>
+ "-k" "not test_init_line_list")
#:phases
#~(modify-phases %standard-phases
- (add-before 'check 'set-home
- (lambda _
- ;; Relax matplotlib warning: ... because the default path
- ;; (/homeless-shelter/.config/matplotlib) is not a writable
- ;; directory ...
- (setenv "HOME" "/tmp"))))))
+ (add-after 'unpack 'set-version
+ (lambda _
+ (setenv "SETUPTOOLS_SCM_PRETEND_VERSION" #$version)))
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "pyproject.toml"
+ ;; XXX: The most of the tests passed, Matplotlib may be
+ ;; upgraded only when we have NumPy 2 as a default.
+ (("matplotlib>=3.10") "matplotlib>=3.8"))))
+ (add-before 'check 'set-home
+ (lambda _
+ ;; Relax matplotlib warning: ... because the default path
+ ;; (/homeless-shelter/.config/matplotlib) is not a writable
+ ;; directory ...
+ (setenv "HOME" "/tmp"))))))
(native-inputs
- (list python-photutils
+ (list nss-certs-for-test
+ python-photutils
+ python-pypeit-minimal
+ python-pytest
python-pytest-astropy
- python-setuptools-scm
- python-wheel))
+ python-pytest-mock
+ python-setuptools
+ python-setuptools-scm))
(propagated-inputs
(list python-astropy
python-gwcs
+ python-matplotlib
python-numpy
python-scipy
- python-specutils))
+ python-specutils-1.9))
(home-page "https://specreduce.readthedocs.io/";)
(synopsis "Spectroscopic Reductions")
(description
@@ -8657,6 +8669,24 @@ about the underlying principles, see
@url{https://github.com/astropy/astropy-APEs/blob/main/APE13.rst, APE13}.")
(license license:bsd-3)))
+;; For [email protected], remove when no longer required.
+(define-public python-specutils-1.9
+ (hidden-package
+ (package
+ (inherit python-specutils)
+ (name "python-specutils")
+ (version "1.9.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "specutils" version))
+ (sha256
+ (base32 "0ar4h7pwm1zygcpfjz78878wd8bjgrzsbcnkpwqy26kvqzn928ih"))))
+ (arguments
+ (substitute-keyword-arguments
+ (package-arguments python-specutils)
+ ((#:tests? _ #t) #f))))))
+
(define-public python-spherical-geometry
(package
(name "python-spherical-geometry")
