guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 26e10e254152ba09adcf7ccedf295abfa1676e19
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Tue Nov 11 23:17:32 2025 +0000
gnu: Add python-astrodata.
* gnu/packages/astronomy.scm (python-astrodata): New variable.
Change-Id: If3552abcddda7f44ec620778e498383894053fda
---
gnu/packages/astronomy.scm | 120 +++++++++++++++++++++++++++++++++++++++++++++
1 file changed, 120 insertions(+)
diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm
index 9709c67315..7f5e9b2a3d 100644
--- a/gnu/packages/astronomy.scm
+++ b/gnu/packages/astronomy.scm
@@ -2724,6 +2724,126 @@ a path (for moving targets) and combining cutouts
@end itemize")
(license license:bsd-3)))
+(define-public python-astrodata
+ (package
+ (name "python-astrodata")
+ (version "2.10.2")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/GeminiDRSoftware/astrodata";)
+ (commit version)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "141qymnirjlrbjzl26wx2dvrr0glva8q74cwxi575a29aa0byrhv"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ ;; tests: 985 passed, 7 skipped, 58 deselected
+ #:test-flags
+ ;; Tests depend on unpackaged DRAGON's module "gemini_instruments".
+ #~(list "--ignore=tests/integration/"
+ ;; Access to https://archive.gemini.edu/file is required to
+ ;; download test data.
+
"--deselect=tests/unit/test_provenance.py::test_convert_provhistory"
+ #$@(map (lambda (test) (string-append "--deselect="
+ "tests/unit/"
+ "test_fits.py::"
+ test))
+ (list "test_attributes"
+ "test_can_add_and_del_extension"
+ "test_copy"
+ "test_crop"
+ "test_crop_ext"
+ "test_do_arith_and_retain_features"
+ "test_extver3"
+ "test_from_hdulist"
+ "test_header"
+ "test_header_collection"
+ "test_paths"
+ "test_phu"
+ "test_read_no_extensions"
+ "test_set_a_keyword_on_phu_deprecated"
+ "test_slice"
+ "test_slice_data"
+ "test_slice_multiple"
+ "test_slice_single_element"))
+ #$@(map (lambda (test) (string-append "--deselect="
+ "tests/unit/"
+
"test_object_construction.py::"
+ test))
+ (list
"test_append_array_to_extension_with_arbitrary_name"
+ "test_append_array_to_extension_with_name_sci"
+ "test_append_array_to_root_no_name"
+ "test_append_array_to_root_with_arbitrary_name"
+ "test_append_array_to_root_with_name_sci"
+ "test_append_dq_var"
+ "test_append_nddata_to_root_no_name"
+ "test_append_nddata_to_root_with_arbitrary_name"
+ "test_append_non_single_slice"
+ "test_append_single_slice"
+ "test_append_slice_to_extension"
+ "test_append_whole_instance"
+ "test_can_read_data"
+ "test_delete_arbitrary_attribute_from_ad"
+ "test_delete_named_associated_extension"))
+ #$@(map (lambda (test) (string-append "--deselect="
+ "tests/unit/"
+ "test_testing.py::"
+ test))
+ (list "test_ADCompare_header_matching"
+ "test_ADCompare_header_matching_flip"
+ "test_ADCompare_init"
+ "test_ADCompare_missing_refcat"
+ "test_ADCompare_numext"
+ "test_ADCompare_run_comparison"
+ "test_ADCompare_wcs"
+ "test_ad_compare"
+ "test_download_file_path_subpath"
+ "test_download_from_archive_None_sub_path"
+ "test_download_memory_leaks"
+ "test_warning_if_no_cache_path"))
+
+ #$@(map (lambda (test) (string-append "--deselect="
+ "tests/unit/"
+ "test_wcs.py::"
+ test))
+ (list "test_gwcs_creation"
+ "test_loglinear_axis"
+ "test_reading_and_writing_sliced_image"
+ "test_remove_unused_world_axis"))
+ ;; assert 1 == 0
+ "-k" (string-append "not test_script_executes[script0-]"
+ " and not test_script_executes[script1-]"))))
+ (native-inputs
+ (list python-poetry-core
+ python-objgraph
+ python-pytest
+ python-pytest-doctestplus))
+ (propagated-inputs
+ (list python-asdf-3
+ python-astropy-6
+ python-gwcs-0.21
+ python-jsonschema
+ python-numpy))
+ (home-page "https://github.com/GeminiDRSoftware/astrodata";)
+ (synopsis "Managing astronomical data through a uniform interface")
+ (description
+ "@code{astrodata} is a package for managing astronomical data through a
+uniform interface. It is designed to be used with the
+@url{https://www.astropy.org/, Astropy package}. @code{astrodata} was created
+for use as part of the @url{https://github.com/GeminiDRSoftware/DRAGONS,
+DRAGONS} data reduction pipeline, but it is now implemented to be useful for
+any astronomical data reduction or analysis project.
+
+Unlike managing files using the @code{astropy.io.fits} package alone,
+@code{astrodata} is designed to be extendible to any data format, and to
+parse, respond to, and store metadata in a consistent, intentional way. This
+makes it especially useful for managing data from multiple instruments,
+telescopes, and data generation utilities.")
+ (license license:bsd-3)))
+
(define-public python-astrodendro
(package
(name "python-astrodendro")
