guix_mirror_bot pushed a commit to branch master
in repository guix.
commit 75016a2ee813b80314b75b31026d790318d64284
Author: Cayetano Santos <[email protected]>
AuthorDate: Mon Dec 8 10:58:19 2025 +0100
gnu: python-lifelines: Compute parallel tests.
* gnu/packages/statistics.scm (python-lifelines)[native-inputs]: Add
python-pytest-xdist.
[arguments]: Add --numprocesses flag to #:test-flags, and remove very
slow tests.
Change-Id: Ib2ecc8bec37d9a7f95f992d8af160283b5abe881
---
gnu/packages/statistics.scm | 21 ++++++++++++++++-----
1 file changed, 16 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm
index 00d8ee5fa7..25e7e69e89 100644
--- a/gnu/packages/statistics.scm
+++ b/gnu/packages/statistics.scm
@@ -1313,16 +1313,27 @@ new data from those PDFs.")
(list
#:test-flags
;; NOTE: Tests take 15-25min to complete on 16 threads and much longer
- ;; in single one, consider to try enabling --numprocesses option.
- #~(list ;; "--numprocesses" (number->string (parallel-job-count))
- ;; This accuracy test fails because 0.012 is not < 0.01.
- "-k" "not test_weibull_with_delayed_entries")))
+ ;; in single one, so enabling --numprocesses option.
+ #~(list "lifelines/tests"
+ "--numprocesses" (number->string (min 16 (parallel-job-count)))
+ "-k" (string-join
+ (list
+ ;; This accuracy test fails because 0.012 is not < 0.01.
+ "not test_weibull_with_delayed_entries"
+ ;; These checks are too expensive, last for ages.
+ "test_univariate_fitters_ok_if_given_timedelta"
+
"test_predict_methods_returns_a_scalar_or_a_array_depending_on_input"
+ "test_cumulative_density_ci_is_ordered_correctly"
+ (string-append
+ "test_univariate_fitters_okay_if_"
+ "given_boolean_col_with_object_dtype"))
+ " and not "))))
(native-inputs
(list python-dill
python-flaky
python-joblib
python-pytest
- ;; python-pytest-xdist
+ python-pytest-xdist ;see NOTE above
python-setuptools
python-wheel))
(propagated-inputs
