guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit d9083f82e6c27974efcdcbed734df9d5f089b79d
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Sun Jan 4 00:03:46 2026 +0000
gnu: python-episcanpy: Use python-numpy@1.
* gnu/packages/bioinformatics.scm (python-episcanpy):
[propagated-inputs]: Remove python-numpy; add python-numpy-1.
[native-inputs]: Remove python-pytest and python-wheel; add
python-setuptools.
Change-Id: I896e2e9c44383d71ad4cea3ca7e4f445999f5842
---
gnu/packages/bioinformatics.scm | 6 ++++--
1 file changed, 4 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index e90d94ad1d..ac24692b60 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8128,6 +8128,9 @@ and random access tool.")
(add-before 'build 'set-numba-cache-dir
(lambda _
(setenv "NUMBA_CACHE_DIR" "/tmp"))))))
+ (native-inputs
+ (list python-setuptools
+ python-setuptools-scm))
(propagated-inputs
(list python-anndata-0.11
python-bamnostic
@@ -8140,7 +8143,7 @@ and random access tool.")
python-natsort
python-networkx
python-numba
- python-numpy
+ python-numpy-1
python-packaging
python-pandas
python-scanpy
@@ -8152,7 +8155,6 @@ and random access tool.")
python-pysam
python-tbb
python-umap-learn))
- (native-inputs (list python-pytest python-setuptools-scm python-wheel))
(home-page "https://github.com/colomemaria/epiScanpy")
(synopsis "Tool for epigenomics single cell analysis")
(description