guix_mirror_bot pushed a commit to branch python-team
in repository guix.
commit c835febea0c3c3c60a063a095db6f024bbb84ef3
Author: Sharlatan Hellseher <[email protected]>
AuthorDate: Thu Jan 8 18:17:16 2026 +0000
gnu: python-pytensor: Update to 2.36.3.
* gnu/packages/python-science.scm (python-pytensor): Update to 2.36.3.
[arguments] <test-flags>: Add option to skip/disable benchmark tests and
rework skipped tests.
[native-inputs]: Add python-pytest-benchmark and python-pytest-xdist.
Change-Id: I9c3c42c21091524741ccef55e4698b59e818512d
---
gnu/packages/python-science.scm | 93 ++++++++++++++++++++++++++---------------
1 file changed, 60 insertions(+), 33 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index b48da6f72f..cf395bc7f2 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -4976,7 +4976,7 @@ objects.")
(define-public python-pytensor
(package
(name "python-pytensor")
- (version "2.28.3") ; the minimal version supporting SciPy 1.12.0
+ (version "2.36.3")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -4985,11 +4985,11 @@ objects.")
(file-name (git-file-name name version))
(sha256
(base32
- "1yz1yslms6kdmy4sgnvbnghhclcpkc80z3vaw9c2y3b3j1fs9b4v"))))
+ "0m9nmwnn0ixrk9ml0yc6qjdcw0vmw7swfcw8vahyfmp70pirhimn"))))
(build-system pyproject-build-system)
(arguments
(list
- ;; tests: 1437 passed, 111 skipped, 11 deselected, 8 xfailed, 154
warnings
+ ;; tests: 1906 passed, 2581 skipped, 34 deselected, 12 xfailed, 274
warnings
#:test-flags
;; XXX: Full test suite takes about 20-30min to complete in single
;; thread, attempt to run tests in parallel with pytest-xdist fails even
@@ -4997,37 +4997,60 @@ objects.")
;; improve it.
;;
;; Upstream implements a script, showing slow tests which may be used to
- ;; exclude even more hanging/slow ones, see
+ ;; exclude even more hanging/slow ones, see:
;; <scripts/slowest_tests/extract-slow-tests.py>.
;;
- ;; Skip computationally intensive tests.
- #~(list "--ignore" "tests/scan/"
- "--ignore" "tests/tensor/"
- "--ignore" "tests/sandbox/"
- "--ignore" "tests/sparse/sandbox/"
- ;; Tests hang while running from these files.
- "--ignore" "tests/compile/test_compilelock.py"
- "--ignore" "tests/link/jax/test_tensor_basic.py"
- ;; XXX: Tests finish with error in these files, check why.
- "--ignore" "tests/compile/function/test_types.py"
- "--ignore" "tests/link/numba/test_basic.py"
- "--ignore" "tests/link/numba/test_blockwise.py"
- "--ignore" "tests/link/numba/test_elemwise.py"
- ;; XXX: Tests fail with AssertionError.
- "--ignore" "tests/graph/rewriting/"
- "--deselect" "tests/graph/test_destroyhandler.py::test_misc"
- "-k" (string-join
- ;; Skip benchmark tests.
- (list "not test_elemwise_speed"
- "test_logsumexp_benchmark"
- "test_fused_elemwise_benchmark"
- "test_scan_multiple_output"
- "test_vector_taps_benchmark"
- "test_cython_performance"
- ;; Assertion fails in tests.
- "test_choose_signature"
- "test_fgraph_to_python_names")
- " and not "))
+ #~(list "--benchmark-disable"
+ "--benchmark-skip"
+ "--durations=50"
+ ;; Skip computationally intensive tests.
+ "--ignore=tests/scan/"
+ "--ignore=tests/tensor/"
+ "--ignore=tests/sandbox/"
+ "--ignore=tests/sparse/sandbox/"
+ ;; A mixture of assertions are not equal in these tests.
+
"--deselect=tests/link/numba/test_nlinalg.py::test_Eigh[x0-L-None]"
+ #$@(map (lambda (test)
+ (string-append "--deselect=tests/graph/rewriting/"
+ "test_basic.py::"
+ test))
+ ;; Tests fail with similar errors: AssertionError:
+ ;; assert 'FunctionGraph(Op1(Op2(x, y), z))' ==
+ ;; 'FunctionGraph(Op4(z, y))'
+ (list "TestPatternNodeRewriter::test_replace_output"
+ "TestPatternNodeRewriter::test_nested_out_pattern"
+ "TestPatternNodeRewriter::test_unification_1"
+ "TestPatternNodeRewriter::test_replace_subgraph"
+ "TestPatternNodeRewriter::test_no_recurse"
+ "TestPatternNodeRewriter::test_multiple"
+ "TestPatternNodeRewriter::test_nested_even"
+ "TestPatternNodeRewriter::test_nested_odd"
+ "TestPatternNodeRewriter::test_expand"
+ "TestPatternNodeRewriter::test_ambiguous"
+ "TestPatternNodeRewriter::test_constant"
+ "TestPatternNodeRewriter::test_constraints"
+ "TestPatternNodeRewriter::test_match_same"
+ "TestPatternNodeRewriter::test_eq"
+ "TestEquilibrium::test_1"
+ "TestEquilibrium::test_2"
+ "TestEquilibrium::test_low_use_ratio"
+ ;; A mixture of assertions are not equal:
+
"TestPatternNodeRewriter::test_allow_multiple_clients"
+ "TestPatternNodeRewriter::test_op_pattern"
+
"test_patternsub_values_eq_approx[out_pattern0-True]"
+
"test_patternsub_values_eq_approx[out_pattern0-False]"
+ "test_patternsub_values_eq_approx[x-True]"
+ "test_patternsub_values_eq_approx[x-False]"
+ "test_patternsub_multi_output_nodes"))
+ #$@(map (lambda (test)
+ (string-append "--deselect=tests/graph/" test))
+ (list "rewriting/test_kanren.py::test_kanren_basic"
+
"rewriting/test_kanren.py::test_KanrenRelationSub_filters"
+
"rewriting/test_kanren.py::test_KanrenRelationSub_dot"
+ "rewriting/test_unify.py::test_unify_Variable"
+ "rewriting/test_unify.py::test_ConstrainedVar"
+ "rewriting/test_unify.py::test_unify_OpPattern"
+ "test_destroyhandler.py::test_misc")))
#:phases
#~(modify-phases %standard-phases
;; Replace version manually because pytensor uses
@@ -5047,7 +5070,9 @@ objects.")
(delete-file-recursively "pytensor"))))))
(native-inputs (list python-cython
python-pytest
+ python-pytest-benchmark
python-pytest-mock
+ python-pytest-xdist
python-versioneer
python-setuptools))
(propagated-inputs (list python-cons
@@ -5055,11 +5080,13 @@ objects.")
python-filelock
python-logical-unification
python-minikanren
+ python-numba
python-numpy
python-scipy
;; [optinal]
+ ;; python-jaxlib
;; python-jax
- python-numba))
+ #;python-llvmlite))
(home-page "https://pytensor.readthedocs.io/en/latest/";)
(synopsis
"Library for mathematical expressions in multi-dimensional arrays")
