guix_mirror_bot pushed a commit to branch r-team
in repository guix.
commit 195d11cf7a94dee1b9dbd26d87e98cb8e9119b94
Author: Ricardo Wurmus <[email protected]>
AuthorDate: Thu Jan 15 10:31:46 2026 +0100
gnu: r-screpertoire: Update to 2.6.2.
* gnu/packages/bioconductor.scm (r-screpertoire): Update to 2.6.2.
[arguments]: Disable more tests.
Change-Id: I0818c1220c08f7a9309f7106e1661ff6ea8a058b
---
gnu/packages/bioconductor.scm | 10 +++++-----
1 file changed, 5 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e1ac348b1e..fd67a3322a 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -13563,13 +13563,13 @@ different experiment.")
(define-public r-screpertoire
(package
(name "r-screpertoire")
- (version "2.5.8")
+ (version "2.6.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "scRepertoire" version))
(sha256
- (base32 "0ijycpmaivcqqmdc90h5jx8rcwg9112pl2mdpms1hgvww70x3s6w"))))
+ (base32 "1n8vdia8bsxikl3vfsnafz1i04qn4kqcrchjrbkzrskbl28mkzq5"))))
(properties
'((upstream-name . "scRepertoire")))
(build-system r-build-system)
@@ -13585,14 +13585,14 @@ different experiment.")
(string-append m "skip('guix')\n"))
((".*getContigDoublets works for inputs with doublets.*" m)
(string-append m "skip('guix')\n")))
- (substitute* "tests/testthat/test-combineContigs.R"
- ((".*combineBCR works.*" m)
- (string-append m "skip('guix')\n")))
(substitute* "tests/testthat/test-loadContigs.R"
((".*loadContigs correctly auto-detects and processes various
formats.*" m)
(string-append m "skip('guix')\n"))
((".*loadContigs correctly processes various formats from
URL.*" m)
(string-append m "skip('guix')\n")))
+ ;; There is code running outside of testthat that tries to
+ ;; download files off the Internet.
+ (delete-file "tests/testthat/test-combineContigs.R")
;; These fail with: Unknown property set: 'kideraFactors'.
(substitute* "tests/testthat/test-positionalProperty.R"
((".*positionalProperty: Output structure is correct.*" m)
