guix_mirror_bot pushed a change to branch python-team
in repository guix.
discard bb57e7e51f gnu: Deprecate python-rich-next in favor of python-reach.
discard b024360242 gnu: python-rich: Update to 14.2.0.
discard cc5586b827 gnu: python-dateparser: Fix tests.
discard 01d540ab08 gnu: python-wrapt: Update to 2.0.1.
discard b768748598 gnu: python-pytest-subtests: Update to 0.15.0.
discard e4e0856bc2 gnu: python-expandvars: Update to 1.1.2.
discard 59ce06c898 gnu: python-numpy-1: Use python-setuptools.
discard eef1c0e803 gnu: python-setuptools-79: Disable tests.
discard b4f9d21d78 gnu: python-pytest-xdist: Skip 2 more tests.
discard 0ca2bcee5b gnu: Add python-pytest-8.
discard 01d90be36d gnu: python-mt940: Enable tests.
discard 6aee635bcf gnu: python-yewtube: Drop phase 'fix-entry-points.
discard bff15632b0 gnu: udiskie: Drop phase 'fix-entry-points.
discard eefef1c043 gnu: python-invoke: Drop phase 'fix-entry-points.
discard 1627f72f05 build-system: pyproject: Improve entry-point parser.
discard 68fe2edd4d build-system: pyproject: Fix entry points handling.
discard 11205052b5 gnu: python-numpy: Reduce closure size through custom wrap
phase
discard 2919d74f44 gnu: python-numpy-1: Reduce closure size through custom
wrap phase
discard 68362a9578 gnu: Remove python-djangorestframework.
discard bc78ef974a gnu: Remove python-pandas-2.
discard 5c11ac5682 gnu: Remove python-hypercorn.
discard 9dee7dea68 gnu: Remove python-requests-next.
discard 3d180e038e gnu: Remove python-schema-0.5.
discard 0fefa47cb8 gnu: Remove python-tldr.
discard 4cf8010f72 gnu: Remove python-cobib.
discard 17ca9ddead gnu: Remove python-pre-commit.
discard 9d76d72460 gnu: Remove python-typing-extensions-next.
discard 6513337371 gnu: Remove python-pbr-next.
discard 9f4d763bad gnu: Remove python-setuptools-next.
discard 06785d4986 gnu: Remove python-poetry-core-next.
discard 4f3a157732 gnu: Remove python-flit-core-next.
discard b6f4798ef7 gnu: python-check-manifest: Update to 0.51.
discard 4ecd59ffd2 gnu: python-setuptools: Bootstrap the package properly.
discard 9eb9bc42f6 gnu: python-pypa-build: Update to 1.3.0.
discard 2554e1724b gnu: python-jaraco-test: Move to (gnu packages
python-build).
discard a42bcfff52 gnu: Add python-jaraco-envs-bootstrap.
discard c45c4ec89c gnu: Add python-virtualenv-bootstrap.
discard 6bed0f17a3 gnu: Add python-filelock-bootstrap.
discard 21314c61f3 gnu: Add python-hatch-vcs-bootstrap.
discard 780f6938e4 gnu: python-distlib: Move to (gnu packages python-build).
discard a250831638 gnu: python-path: Move to (gnu packages python-build).
discard 2e5390a92d gnu: Add python-platformdirs-bootstrap.
discard e754a32e8b gnu: python-jaraco-path: Move to (gnu packages
python-build).
discard a27a847d9d gnu: python-jaraco-collections: Move to (gnu packages
python-build).
discard d7b9ef5404 gnu: python-jaraco-text: Move to (gnu packages
python-build).
discard 5d513bb03c gnu: python-jaraco-functools: Move to (gnu packages
python-build).
discard 57863dda04 gnu: python-jaraco-context: Move to (gnu packages
python-build).
discard 86a459a2a2 gnu: python-jaraco-classes: Move to (gnu packages
python-build).
discard a834eb19c7 gnu: python-inflect: Move to (gnu packages python-build).
discard 806845c9d9 gnu: python-typeguard: Move to (gnu packages python-build).
discard be15fc4ef8 gnu: python-typeguard: Lift python-mypy native-input.
discard 25d1c2c4a5 gnu: python-more-itertools: Move to (gnu packages
python-build).
discard 95e21527e6 gnu: python-backports-tarfile: Move to (gnu packages
python-build).
discard e216e4b3db gnu: python-pyproject-hooks: Move to (gnu packages
python-build).
discard 2fbd13672c gnu: python-colorama: Move to (gnu packages python-build).
discard 8d325346ef gnu: python-testpath: Move to (gnu packages python-build).
discard fc323ed0fc gnu: python-pep517-bootstrap: Move to (gnu packages
python-xyz).
discard 1e9e3672a2 gnu: python-autocommand: Move to (gnu packages
python-build).
discard d0487d45c0 gnu: python-packaging: Move to (gnu packages python-build).
discard 9f0b5b9f21 gnu: python-pretend: Adapt native-inputs.
discard 9e2195fd05 gnu: python-pretend: Move to (gnu packages python-build).
discard f916ce7a43 gnu: python-six: Move to (gnu packages python-build).
discard 291263b6ac gnu: python-pygments: Move to (gnu packages python-build).
discard 546867a80d gnu: python-pytest-bootstrap: Move to (gnu packages
python-build).
discard 0f9b450cee gnu: Add python-setuptools-scm-bootstrap.
discard fe83291857 gnu: Add python-pygments-bootstrap.
discard 2546def6d6 gnu: python-iniconfig: Move to (gnu packages python-build).
discard db9b748719 gnu: Add python-hatchling-bootstrap.
discard b7e20c98f7 build-system/pyproject: Improve style.
discard 5dec7d7979 gnu: python-pyfavicon: Correct package.
discard a5970e9aa7 gnu: python-pyro4: Correct package.
discard 3028075272 gnu: python-pyzbar: Modernize package.
discard 0e9f754562 gnu: python-aiosqlite: Correct package.
discard d92d8cd2a5 gnu: python-envs: Propagate python-click.
discard 18087f3fbb gnu: python-monthdelta: Disable tests.
discard ff85cc6894 gnu: python-axolotl-curve25519: Disable tests.
discard f712e45fd2 gnu: Remove python-hypothesis-next.
discard 218e465402 gnu: Remove python-pytest-7.
discard b226806683 gnu: Remove python-pytest-6.
discard 8652fe5d12 gnu: python-iso8601/pinned: Switch to pyproject.
discard ca4ed5c409 gnu: python-fonttools-minimal: Switch to pyproject.
discard cf2aea0533 gnu: python-pytest: Update to 9.0.2.
discard f6bbf46edc gnu: python-hypothesis: Update to 6.150.2.
discard ae7d7189f8 gnu: yelp-tools: Switch to python-lxml-for-texlive.
discard 41e0bb9a53 gnu: mallard-ducktype: Build with a custom build-system.
discard 143c1ec49a gnu: Add python-lxml-for-texlive.
discard 095da9e506 gnu: meson: Use a custom build-system.
discard a3bd24405f gnu: Add python-setuptools-bootstrap.
discard c6bee5e7c1 build-system/pyproject: Remove uneeded use of
pyproject-guile-json.
discard 8a185da1b5 build-system/cargo: Remove uneeded use of cargo-guile-json.
discard 327ec96be7 build-system/cargo: Using autoload for (json) module.
discard f04724abfb build-system/pyproject: Using autoload for (json) module.
discard dcf4b74a2f build-system/pyproject: Decouple from python-build-system.
add af764a1cd3 gnu: libgit2: Set default version to 1.9.
add b412c8a0e8 gnu: Replace libgit2-1.9 with default libgit2 where
possible.
add 9464df1c10 gnu: Replace libgit2-1.8 with default libgit2 where possible
add e0d35f0dc4 gnu: sqlitebrowser: Update to 3.13.1.
add a328cb168c gnu: sqlitebrowser: Use system nlohmann-json.
add 517288e5f5 gnu: python-pygit2: Rename to python-pygit2-1.11.
add 244db1217a gnu: python-pygit2-1.18: Rename to python-pygit2.
add e66e14cbd4 gnu: patman: Update input.
add 0e9dae7787 gnu: gallia: Update input.
add 1dab3b2292 gnu: python-pypeit: Update input
add 9b87e309e1 gnu: offlate: Update input.
add af60daaa10 gnu: openpmix: Fix home-page.
add e606fa7959 gnu: opencolorio: Update input.
add 4c12b9b002 gnu: Add apache-parent-pom-33.
add dece6d674e gnu: Add apache-commons-parent-pom-78.
add 7c8f77c51c gnu: Add java-commons-io 2.21.
add a216d12073 gnu: Add java-mime4j-core.
add 6dfaa6027d gnu: Add java-jakarta-activation-api.
add 6bfab7b3fb gnu: Add java-axiom-base64-utils.
add ca55e8152a gnu: Add java-axiom-xml-utils.
add 7737d389c6 gnu: Add java-axiom-core-streams.
add 710d15809f gnu: Add java-axiom-weaver-annotations.
add cd3faab72f gnu: Add java-axiom-api.
add f60fd29033 gnu: Add java-axiom-core-mixins.
add eaed2a68a6 gnu: Add java-axiom-om-mixins.
add 7d7dd885f4 gnu: Add java-axiom-dom-mixins.
add aafce91741 gnu: Add java-axiom-impl.
add 9436a2f8c0 gnu: Add java-saxon-he-10.
add d08bceec95 doc: Fix an URL.
add 6f43befa56 doc: Small rewording.
add 082a636053 doc: Add an URL link.
new 62394b618e build-system/pyproject: Decouple from python-build-system.
new a14e8f32f9 build-system/pyproject: Using autoload for (json) module.
new de70e56725 build-system/cargo: Using autoload for (json) module.
new d696d2a568 build-system/cargo: Remove uneeded use of cargo-guile-json.
new b2740a41b7 build-system/pyproject: Remove uneeded use of
pyproject-guile-json.
new dbc83c83b0 gnu: Add python-setuptools-bootstrap.
new 61ed7943dc gnu: meson: Use a custom build-system.
new e51e111c95 gnu: Add python-lxml-for-texlive.
new f0c746abef gnu: mallard-ducktype: Build with a custom build-system.
new 70637242db gnu: yelp-tools: Switch to python-lxml-for-texlive.
new 0ff3a9f938 gnu: python-hypothesis: Update to 6.150.2.
new 8741b89777 gnu: python-pytest: Update to 9.0.2.
new afecc5a0c1 gnu: python-fonttools-minimal: Switch to pyproject.
new cd18c44435 gnu: python-iso8601/pinned: Switch to pyproject.
new cec6b72254 gnu: Remove python-pytest-6.
new 282551d7ca gnu: Remove python-pytest-7.
new 4ceacf0c71 gnu: Remove python-hypothesis-next.
new 39e0799af6 gnu: python-axolotl-curve25519: Disable tests.
new 27318516e0 gnu: python-monthdelta: Disable tests.
new 74e52625ff gnu: python-envs: Propagate python-click.
new 78bc9797d7 gnu: python-aiosqlite: Correct package.
new bce30038db gnu: python-pyzbar: Modernize package.
new 9f2b553755 gnu: python-pyro4: Correct package.
new dc3b6caf9b gnu: python-pyfavicon: Correct package.
new 699490e110 build-system/pyproject: Improve style.
new 78d71a978a gnu: Add python-hatchling-bootstrap.
new 3b56bfc126 gnu: python-iniconfig: Move to (gnu packages python-build).
new 2bcfaf6167 gnu: Add python-pygments-bootstrap.
new e9debdc03d gnu: Add python-setuptools-scm-bootstrap.
new ffd1ba71ea gnu: python-pytest-bootstrap: Move to (gnu packages
python-build).
new 50de104eb9 gnu: python-pygments: Move to (gnu packages python-build).
new 825dceb410 gnu: python-six: Move to (gnu packages python-build).
new 687fc2ab45 gnu: python-pretend: Move to (gnu packages python-build).
new 0cb2b9e9c3 gnu: python-pretend: Adapt native-inputs.
new 8f76aaee4e gnu: python-packaging: Move to (gnu packages python-build).
new ad98916bb3 gnu: python-autocommand: Move to (gnu packages
python-build).
new 64a7e813d1 gnu: python-pep517-bootstrap: Move to (gnu packages
python-xyz).
new 02d9d4ed1c gnu: python-testpath: Move to (gnu packages python-build).
new feaf82cbb7 gnu: python-colorama: Move to (gnu packages python-build).
new 53e38ac740 gnu: python-pyproject-hooks: Move to (gnu packages
python-build).
new bfd1e98148 gnu: python-backports-tarfile: Move to (gnu packages
python-build).
new fe2cf9451c gnu: python-more-itertools: Move to (gnu packages
python-build).
new 43a8309cfa gnu: python-typeguard: Lift python-mypy native-input.
new 40d9cfe0b3 gnu: python-typeguard: Move to (gnu packages python-build).
new 87d07284a5 gnu: python-inflect: Move to (gnu packages python-build).
new d01d3cdd2f gnu: python-jaraco-classes: Move to (gnu packages
python-build).
new baeed2fbb7 gnu: python-jaraco-context: Move to (gnu packages
python-build).
new 20fc01ef78 gnu: python-jaraco-functools: Move to (gnu packages
python-build).
new dd476ec09b gnu: python-jaraco-text: Move to (gnu packages
python-build).
new adc8cee89f gnu: python-jaraco-collections: Move to (gnu packages
python-build).
new d16c52e8e5 gnu: python-jaraco-path: Move to (gnu packages
python-build).
new 5553d55110 gnu: Add python-platformdirs-bootstrap.
new 308ebcd0d2 gnu: python-path: Move to (gnu packages python-build).
new 561dd0782c gnu: python-distlib: Move to (gnu packages python-build).
new 117a454f57 gnu: Add python-hatch-vcs-bootstrap.
new b75d3ace1c gnu: Add python-filelock-bootstrap.
new 3c0b691def gnu: Add python-virtualenv-bootstrap.
new f113116d66 gnu: Add python-jaraco-envs-bootstrap.
new 0f890ae011 gnu: python-jaraco-test: Move to (gnu packages
python-build).
new 9a9f0da829 gnu: python-pypa-build: Update to 1.3.0.
new cd7580d660 gnu: python-setuptools: Bootstrap the package properly.
new 01886ff5f0 gnu: python-check-manifest: Update to 0.51.
new 244c5dbe14 gnu: Remove python-flit-core-next.
new 9dbe4ccab5 gnu: Remove python-poetry-core-next.
new b3085d4a20 gnu: Remove python-setuptools-next.
new 4d84bc7900 gnu: Remove python-pbr-next.
new 5bc680b0e3 gnu: Remove python-typing-extensions-next.
new 29ba384ebc gnu: Remove python-pre-commit.
new ea034089fc gnu: Remove python-cobib.
new 4f05f0cc54 gnu: Remove python-tldr.
new 9eb6045826 gnu: Remove python-schema-0.5.
new 3e6a371377 gnu: Remove python-requests-next.
new b19d4ae82a gnu: Remove python-hypercorn.
new 44a8f4d51a gnu: Remove python-pandas-2.
new a798eb9c9a gnu: Remove python-djangorestframework.
new 074aa066de gnu: python-numpy-1: Reduce closure size through custom
wrap phase
new b7ccbc4752 gnu: python-numpy: Reduce closure size through custom wrap
phase
new b9bc7c1bad build-system: pyproject: Fix entry points handling.
new 816b73fa21 build-system: pyproject: Improve entry-point parser.
new 5161b8d1b7 gnu: python-invoke: Drop phase 'fix-entry-points.
new 4fbef44722 gnu: udiskie: Drop phase 'fix-entry-points.
new 0140c788d2 gnu: python-yewtube: Drop phase 'fix-entry-points.
new 082af96d9b gnu: python-mt940: Enable tests.
new 5314ccdb33 gnu: Add python-pytest-8.
new abb1ca8211 gnu: python-pytest-xdist: Skip 2 more tests.
new 2ee73bff48 gnu: python-setuptools-79: Disable tests.
new dd33ce034b gnu: python-numpy-1: Use python-setuptools.
new 4b78dc11c4 gnu: python-expandvars: Update to 1.1.2.
new f4cd116925 gnu: python-pytest-subtests: Update to 0.15.0.
new 40f63c1134 gnu: python-wrapt: Update to 2.0.1.
new 53bf5b0de1 gnu: python-dateparser: Fix tests.
new 01ea05cfd3 gnu: python-rich: Update to 14.2.0.
new 19cb83081f gnu: Deprecate python-rich-next in favor of python-reach.
new 131d1e6c52 gnu: python-pytest-asyncio: Update to 1.3.0.
new 96dc2ba48c gnu: python-pytest-mock: Update to 3.15.1.
new 8b99bacbda gnu: python-pytest-timeout: Update to 2.4.0.
new 33f8ee00f7 gnu: python-pybedtools: Update to 0.12.0.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (bb57e7e51f)
\
N -- N -- N refs/heads/python-team (33f8ee00f7)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 97 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/guix.texi | 18 +--
gnu/packages/bioinformatics.scm | 83 +++++------
gnu/packages/check.scm | 40 +++---
gnu/packages/databases.scm | 27 +++-
gnu/packages/guile.scm | 2 +-
gnu/packages/image-processing.scm | 2 +-
gnu/packages/jami.scm | 2 +-
gnu/packages/java-xml.scm | 268 ++++++++++++++++++++++++++++++++++++
gnu/packages/java.scm | 82 +++++++++++
gnu/packages/kde-utils.scm | 2 +-
gnu/packages/maven-parent-pom.scm | 10 ++
gnu/packages/package-management.scm | 2 +-
gnu/packages/parallel.scm | 2 +-
gnu/packages/python-build.scm | 7 +-
gnu/packages/python-xyz.scm | 10 +-
gnu/packages/ruby-xyz.scm | 2 +-
gnu/packages/version-control.scm | 4 +-
17 files changed, 471 insertions(+), 92 deletions(-)
