guix_mirror_bot pushed a commit to branch master
in repository guix.
commit f4bf35a92b41501722a1cc137c90ddef1dbb37a6
Author: Hartmut Goebel <[email protected]>
AuthorDate: Thu Jan 22 20:22:20 2026 +0100
gnu: libmaus2: Update to 2.0.813.
* gnu/packages/bioinformatics.scm (libmaus2): Update to 2.0.813.
[source]: Add patch. [inputs]: Add boost.
* gnu/packages/patches/libmauss-fix-gcc-13-require-include-cstdint.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Register new patch file.
Change-Id: I607773a7c7b7a43c0bd037bc8b99666c89e9c429
---
gnu/local.mk | 1 +
gnu/packages/bioinformatics.scm | 10 ++++++---
...bmaus2-fix-gcc-13-require-include-cstdint.patch | 24 ++++++++++++++++++++++
3 files changed, 32 insertions(+), 3 deletions(-)
diff --git a/gnu/local.mk b/gnu/local.mk
index 70f2d933d3..2faf0f1a3c 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1697,6 +1697,7 @@ dist_patch_DATA =
\
%D%/packages/patches/libinfinity-renew-test-certificate.patch \
%D%/packages/patches/libjami-pkgconf.patch \
%D%/packages/patches/libjami-simdutf.patch \
+ %D%/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch
\
%D%/packages/patches/libretro-dolphin-emu-data.patch \
%D%/packages/patches/libretro-dolphin-emu-gc-font-tool.patch \
%D%/packages/patches/libretro-dolphin-emu-libusb-assert.patch \
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 46968784d0..41ec272dfb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -30,6 +30,7 @@
;;; Copyright © 2025 nomike Postmann <[email protected]>
;;; Copyright © 2025 Janneke Nieuwenhuizen <[email protected]>
;;; Copyright © 2025 Sharlatan Hellseher <[email protected]>
+;;; Copyright © 2026 Hartmut Goebel <[email protected]>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -18745,19 +18746,22 @@ contigs alone.")
(define-public libmaus2
(package
(name "libmaus2")
- (version "2.0.786")
+ (version "2.0.813")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://gitlab.com/german.tischler/libmaus2";)
- (commit (string-append version
"-release-20210531143054"))))
+ (commit (string-append version
"-release-20221210220409"))))
(file-name (git-file-name name version))
(sha256
(base32
- "1rxakmwjcx2yq5sjh3v849f7dfw4xzc2fyzf6s28s3p95z84w564"))))
+ "1hbkp3vjykkn8vkplzxyc6vnm69rzqhnj041jgfk61wvn5r1xzw8"))
+ (patches
+ (search-patches
"libmaus2-fix-gcc-13-require-include-cstdint.patch"))))
(build-system gnu-build-system)
;; The test suite attempts to execute ../test-driver, which does not exist.
(arguments '(#:tests? #false))
+ (inputs (list boost))
(propagated-inputs
(list zlib))
(native-inputs
diff --git
a/gnu/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch
b/gnu/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch
new file mode 100644
index 0000000000..a3f8dd5bd0
--- /dev/null
+++ b/gnu/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch
@@ -0,0 +1,24 @@
+From 3c272a9dc85c74de983d5b0b1ebca593aeb86a75 Mon Sep 17 00:00:00 2001
+From: Kuoi <[email protected]>
+Date: Sat, 8 Feb 2025 05:23:32 +0000
+Subject: [PATCH] fix: gcc 13 require #include <cstdint>
+
+---
+ src/libmaus2/util/MemUsage.hpp | 1 +
+ 1 file changed, 1 insertion(+)
+
+diff --git a/src/libmaus2/util/MemUsage.hpp b/src/libmaus2/util/MemUsage.hpp
+index 039a64907..8181e7285 100644
+--- a/src/libmaus2/util/MemUsage.hpp
++++ b/src/libmaus2/util/MemUsage.hpp
+@@ -23,6 +23,7 @@
+ #include <fstream>
+ #include <map>
+ #include <sstream>
++#include <cstdint>
+
+ namespace libmaus2
+ {
+--
+GitLab
+
