guix_mirror_bot pushed a change to branch rust-team
in repository guix.
discard fb41a05b3c gnu: make-rust-sysroot: Update for rust-1.90.
discard 52668aa17d gnu: yabridgectl: Use newer cargo dependencies.
discard 5d6a5732ae gnu: rust-crates: Remove some precompiled libraries.
discard 703bd013af gnu: ruff: Install shell completions.
discard 4f5d18e8cf gnu: Add ruff.
discard 6c1764d9f9 gnu: Add rust-salsa-0.23.0.3713cd7.
discard d0de8f1b81 gnu: rust: Add a search path for the rust sources.
discard 1c67ece77e gnu: rust: Don't skip extra tests on aarch64-linux.
discard 67195baedd gnu: rust: Enable more tests.
discard 7b2d0d67df gnu: rust: Fix native-search-paths specifications.
discard f910a4d979 gnu: rust: Update to 1.90.
discard d306bc950e gnu: Add rust-1.90.
discard 75bb6493ff gnu: Add rust-1.89.
discard ae993e4528 gnu: rust: Delete extra files in install phase.
add 9e3feb052c gnu: trealla: Update to 2.89.11.
add af86a7e6bc gnu: dwarfs: Update to 0.14.1.
add 854243adcd gnu: Add mpv-thumbfast.
add b8c8540203 gnu: Add mpv-uosc.
add c5728c3ba0 import: Add 'apache' updater.
add f4bf35a92b gnu: libmaus2: Update to 2.0.813.
add 83012bd39a gnu: biobambam2: Update to 2.0.185.
add 77983185fd gnu: sumo: Update to 1.25.0.
add 1f631d6d15 manifest: Add codeberg-cli.
add fcbf2548a1 gnu: Remove python-fusepyng.
add 077ba95865 gnu: netcdf: Remove hdf4 input.
add 01201258bc gnu: imv: Update to 5.0.1.
add 678f0389ab gnu: muon: Update to 0.5.0.
add 12c86daece gnu: zeal: Remove unreferenced Qt5 input.
add fb3a094ae7 gnu: python-django: Update to 5.2.9 to fix CVEs.
add dfa5810754 gnu: qtkeychain, qtkeychain-qt6: Update to 0.15.0.
add d15d7709be gnu: qxmpp: Update to 1.12.0.
add 18023c0a95 gnu: kaidan: Update to 0.13.0.
add 59ff16c9e1 gnu: Add fusion.
add e184429c15 gnu: emacs-lobsters: Update to 1.2.
add 6554fce76b gnu: emacs-marginalia: Update to 2.6.
add 927cad0854 gnu: emacs-cape: Update to 2.4.
add 9eed39b841 gnu: python-platypush: Update to 1.3.14.
add 2edff5724b gnu: webssh: Fix build.
add 4f82eba196 gnu: webssh: Update to 1.6.3.
add 7472e6c3fd gnu: clustershell: Update to 1.9.3.
add 2e25daf39d gnu: gnumach: Don't truncate kernel messages.
add b2ada25a26 gnu: hurd: Fix select for streamio.
add 73899752f8 system: hurd: Switch to the Shepherd’s system log.
add 93139a4d64 gnu: guix-modules: Update to 0.3.0.
add 29fbc0c3f7 gnu: zint: Update to 2.16.0.
add 1445f22f4f gnu: zint: Split Qt GUI into distinct zint-with-qt package.
add 4076de869e gnu: libunistring: Resurrect cross-build for MinGW.
add 4fa29f3bed git-authenticate, inferior: Autoload Git modules.
add 15f87a0f03 describe: Define and use ‘modules-from-current-profile’.
add 7f46cd4bec gnu: texlive: Deprecate in favor of texlive-scheme-full.
add 17f8e88819 gnu: xiphos: Refresh deprecated input.
add 8bdbfc13ff gnu: asciinema: Update to 3.0.1.
add d8ceb03b4b gnu: bmake: Update to 20251111.
add f87c5073ea gnu: bmake: Run tests in check phase.
add 5b41ff4418 gnu: wget2: Update to 2.2.1.
add 0e96e24b4b gnu: ddrescue: Update to 1.30.
add 8342e5dbc9 gnu: sage: Add missing standard inputs.
add 92218e6195 gnu: libgit2-glib: Update to 1.2.1.
add 306495b073 gnu: marble-qt: Rename to marble.
add 4eef47d0e8 gnu: gpsd: Update to 3.27.3.
add e517cb398f gnu: gpsd: Switch to Qt6.
add 4c1855fee3 gnu: mkvtoolnix: Update to 97.0
add fbb1b92560 gnu: pythonscad: Update to 0.8.4.
add 5a4c954f63 gnu: pythonscad: Improve style.
add 933c9ecb62 gnu: Add python-setuptools-79.
add afd189764f gnu: python-cython: Update to 3.1.7.
add ad5eb3f758 gnu: Add python-cython-next.
add d0ce5306aa gnu: python-numpy: Set NumPy 2 as default.
add c0244f858b gnu: python-numpy-2: Deprecate by python-numpy.
add e76cbbc8ac gnu: python-httptools: Update to 0.7.1.
add e0ae141759 gnu: python-matplotlib: Update to 3.10.8.
add b4cd49d18e gnu: python-pandas: Update to 2.3.3.
add d601af10bd gnu: python-msgpack: Update to 1.1.2.
add 859e9fd56f gnu: python-scipy: Update to 1.16.3.
add 92a0723389 gnu: python-pytest-regressions: Update to 2.8.3.
add 9f85662729 gnu: python-pytest-regressions: Move to python-check.
add c3942b7deb gnu: python-h5py: Update to 3.15.1.
add b5dd854f74 gnu: python-blosc: Adjust inputs.
add 26ecbf391a gnu: python-setuptools-scm-next: Undeprecate.
add c01a759816 gnu: python-dask: Update to 2025.11.0.
add 82bdd73b7c gnu: Add python-typing-inspection.
add b715e332d9 gnu: Add python-pytest-run-parallel.
add 01e1779319 gnu: python-pydantic-core: Update to 2.41.5.
add 2a9429b715 gnu: python-pydantic: Update to 2.12.5.
add c3aefebcef gnu: Add python-pydantic-1.
add a0ed2482e4 gnu: python-pydantic-2: Deprecate by python-pydantic.
add a611ae225d gnu: python-nbval: Reduce closure size.
add 10e0de596b gnu: python-scikit-learn: Update to 1.7.2.
add 9beaa9ef7e gnu: python-distributed: Update to 2025.11.0.
add f0c14fa2a2 gnu: python-numexpr: Update to 2.14.1.
add 94d5cc2406 gnu: python-ndindex: Update to 1.10.1.
add ae92a189ff gnu: c-blosc2: Update to 2.22.0.
add 8fd5ccc87b gnu: python-blosc2: Update to 3.12.2.
add f48805713f gnu: netcdf: Update to 4.9.2.
add d7572ac7e1 gnu: python-netcdf4: Update to 1.7.2.
add bc311d8500 gnu: python-pydantic-settings: Update to 2.12.0.
add eb0c092037 gnu: python-casa-formats-io: Fix tests.
add af43879732 gnu: Add python-ulid.
add 8f13bd0dca gnu: Add python-cron-converter.
add 0f86974f08 gnu: Add python-annotated-doc.
add a6d97ad989 gnu: Add python-pydantic-extra-types.
add b052a8626e gnu: python-fastapi: Update to 0.124.0.
add 5de81642cf gnu: python-astropy-6: Skip some tests.
add d855d82eb2 gnu: python-xmp-toolkit: Update to 2.1.0.
add 159359dcf2 gnu: python-django-ninja: Update to 1.5.1.
add 0dfb6a47a3 gnu: python-dendropy: Update to 5.0.8.
add 782d532a40 gnu: python-algopy: Update to 0.7.2.
add a4d4d6af00 gnu: python-cloudpathlib: Fix tests.
add 32109ddea4 gnu: python-stwcs: Remove relax-requirements phase.
add d32d3fbd49 gnu: python-astroml: Fix build.
add 4c16c28f74 gnu: python-guardpost: Update to 1.0.4.
add ae7c11b6c6 gnu: Add python-py3exiv2.
add 0c660133df gnu: didjvu: Update to 0.11.0.
add 6405ea2b2a gnu: python-blacksheep: Update to 2.4.5.
add 237c3799c6 gnu: checkm: Update to 1.2.4.
add 5981d7c0b1 gnu: blender: Use python-numpy@1.
add 0f56b8222a gnu: python-cesium: Update to 0.12.4.
add 1a8c17b352 gnu: python-ctapipe: Update to 0.28.0.
add 376056617d gnu: python-nox: Update to 2025.11.12.
add 6f9d625bce gnu: python-esutil: Fix build with gcc-14.
add 8392c834c8 gnu: genetic: Use python-pynbody@2.
add 1ea1298bba gnu: python-fgivenx: Update to 2.4.2-0.cf51dbf.
add 96426dc57d gnu: python-gwcs: Remove relax-requirements phase.
add 12b20ce371 gnu: python-jwst: Remove relax-requirements phase.
add 3ff9ea72f4 gnu: python-astrodata: Use python-numpy@1.
add 3f3aaa0009 gnu: python-fits-schema: Update to 0.5.6-0.ccffe04.
add 22239043a7 gnu: python-scikit-image: Update to 0.25.2.
add 75d3068065 gnu: python-scikit-image-next: Deprecate by
python-scikit-image.
add 43bce7f38c gnu: python-statmorph: Adjust inputs.
add fd00d2ad5d gnu: python-jacobi: Fix tests.
add e4c3339f63 gnu: python-zodipy: Remove relax-requirements phase.
add 3dca03a7f3 gnu: python-kanon: Use python-numpy@1.
add 193542ade1 gnu: python-linetools: Skip 2 tests.
add 02ec34ddb5 gnu: cpat: Update to 3.0.5.
add 02b4dc1b34 gnu: python-annoy: Add python-h5py.
add 21dc181918 gnu: python-tables: Update to 3.10.2-0.aad9079.
add fb67f784f4 gnu: pyscenic: Update to 0.12.1-2.06bafba4.
add 24271778fa gnu: python-llvmlite: Update to 0.45.0.
add 42df9df17d gnu: python-numba: Update to 0.62.1.
add 32160d32e4 gnu: catch2: Update to 2.13.10.
add 5e05d60785 gnu: python-xarray: Update to 2025.12.0.
add 8dc07ea089 gnu: python-dask-image: Update to 2025.11.0.
add bcf332f060 gnu: python-reproject: Update to 0.19.0.
add 3f241ee939 gnu: python-spectral-cube: Update to 0.6.7.
add 2487914fbe gnu: python-xarray-einstats: Update to 0.9.1.
add 8648556deb gnu: python-naima: Update to 0.10.3.
add 602cf6ca46 gnu: python-arboreto: Update to 0.1.6-0.79f916b.
add 2d930d5a70 gnu: python-arviz: Update to 0.22.0.
add fa51fe801f gnu: python-cleanlab: Fix build.
add 300bb5936a gnu: python-pyopengl: Skip one test.
add 7533e089e7 gnu: python-modin: Update to 0.37.1.
add 3bdcc858e0 gnu: python-jwcrypto: Adjust inputs.
add 95cb3d1bb5 gnu: websockify: Update to 0.13.0.
add 814a335b47 gnu: veusz: Update to 4.2.
add af005403dc gnu: python-seaborn: Skip 3 tests.
add 5ef51a0820 gnu: python-glue-astronomy: Skip 3 tests.
add 0e1c6cecad gnu: Add python-lofar-parameterset.
add 3e4caa25a3 gnu: python-losoto: Update to 2.6.0.
add c49f801deb gnu: python-lofar-h5plot: Use python-numpy@1.
add 606e072449 gnu: python-meshio: Skip some tests.
add 74b52b1ad8 gnu: python-numdifftools: Update to 0.9.42.
add 5cd724f523 gnu: python-sunkit-spex: Update to 0.4.0-0.bb544c4.
add 446e2a34f8 gnu: python-kalepy: Skip 5 tests.
add b595d65965 gnu: python-regions: Update to 0.11.
add 2f52a550ba gnu: python-romancal: Remove relax-requirements phase.
add abe18178a7 gnu: python-hnswlib: Update to 0.8.0.
add 4a613db042 gnu: python-loompy: Update to 3.0.8.
add 761c0a21a1 gnu: urh: Use python-numpy@1.
add 9a1f731257 gnu: python-ase: Update to 3.26.0.
add 1c4775c27c gnu: python-asap3: Update to 3.13.10.
add fbbec15aac gnu: python-specutils: Remove relax-requirements phase.
add 6ee29be434 gnu: python-jmespath: Switch to pyproject.
add 9748ba26cd gnu: python-stcal: Adjust relax-requirments phase.
add b34db23b8a gnu: python-pytest-randomly: Update to 4.0.1.
add 4dfb9dde2a gnu: python-pytest-randomly: Move to python-check.
add ec3c031c3e gnu: python-pytest-doctestplus: Update to 1.6.0.
add 6bdf5f3b66 gnu: python-pythran: Clean up artifacts.
add 659477ffe0 gnu: python-contourpy: Update to 1.3.3.
add 2bb291679b gnu: python-ipython: Update to 9.8.0.
add c699eb12d9 gnu: Add python-ipython-minimal.
add adb2e90001 gnu: python-jupyter-core: Move to jupyter.
add 5136864a3f gnu: python-jupyter-core: Update to 5.9.1.
add 4a41327e07 gnu: python-jupyter-client: Simplfy bootstrapping.
add 6e8d2d28e9 gnu: python-jupyter-client: Move to jupyter.
add 7289e6b16e gnu: Remove python-jupyter-console-minimal.
add e0b4ea8b85 gnu: Add python-pytest-jupyter-minimal.
add 80522b714d gnu: python-jupyter-client: Update to 8.7.0.
add d1190851bb gnu: python-ipykernel: Update to 7.1.0.
add d7ea14f8cd gnu: python-jupyter-console: Update to 6.6.3.
add c05faf2d26 gnu: python-jupyter-console: Move to jupyter.
add e96c1f3cc4 gnu: Add python-jupyter-client-7.
add 81f2adac9b gnu: python-notebook: Fix build.
add c76fbf401d gnu: python-pycollada: Update to 0.9.2.
add 7e351da8ef gnu: python-pynbody: Use python-ipython-minimal for tests.
add e991e91871 gnu: crossmap: Update to 0.7.3.
add b014942a69 gnu: python-awkward-cpp: Update to 47.
add fa6ac5c111 gnu: python-awkward: Update to 2.8.5.
add 917b81c8b0 gnu: python-anndata: Update to 0.12.7.
add 364278b1ca gnu: Add python-anndata-minimal.
add deac84b29e gnu: python-biom-format: Update to 2.1.17.
add af61727fd2 gnu: endgame-singularity: Update to 1.1.
add 9d660798bd gnu: python-scikit-bio: Update to 0.7.1.post1.
add bd1885af17 gnu: Add python-diptest.
add 38b3b8cba6 gnu: pyscenic: Add missing python-diptest.
add fa85453127 gnu: python-pandera: Update to 0.27.1.
add 09407e2013 gnu: python-fbpca: Fix tests.
add 3228266ed5 gnu: python-biopython: Update to 1.86.
add 18cc69a875 gnu: python-statsmodels: Update to 0.14.5.
add 65a250d35f gnu: python-scanpy: Update to 1.11.5.
add ac2544a69d gnu: python-circe: Update to 0.3.9.
add 44efd7c77b gnu: python-cooler: Update to 0.10.4.
add 0d78581ee6 gnu: python-coolbox: Update to 0.3.9.
add ada8242a71 gnu: htseq: Update to 2.0.9.
add 0d064349e5 gnu: python-vaex-core: Update to 4.19.0.
add 7dd4976d83 gnu: python-jupyterlab-widgets: Update to 3.0.12.
add c32af5bb5f gnu: python-ipywidgets: Update to 8.1.4.
add b12b30278c gnu: Add python-array-api-strict.
add 315909345f gnu: python-plotly: Update to 5.24.1.
add 54bf0a4d59 gnu: python-pyudev: Update to 0.24.4.
add c8d5ee01f2 gnu: python-numpoly: Update to 1.3.4.
add bb97a094ea gnu: python-chaospy: Update to 4.3.21.
add f6280d1456 gnu: tangos: Update to 1.11.0.
add 798427c6be gnu: Remove python-eventio-1.
add 62d54203dc gnu: Add qdldl.
add 4b685e21c4 gnu: Add osqp.
add f5f6311d34 gnu: python-osqp: Update to 1.0.5.
add e80a101d83 gnu: Add scs.
add 6d3c8b3e42 gnu: python-scs: Update to 3.2.10.
add a869caec91 gnu: python-cvxpy: Update to 1.7.5.
add b5a9dbc129 gnu: python-fastcluster: Update to 1.3.0.
add bbb4b9fedc gnu: Add python-lsprotocol.
add 3de553049d gnu: Add python-pygls.
add bbc241a1a4 gnu: python-crosshair: Update to 0.0.101.
add 9d51f4ba01 gnu: python-metacells: Simplify.
add 1cc6355303 gnu: python-verde: Update to 1.8.1.
add 8aa80ded78 gnu: Add python-pyunlocbox.
add 193c758ca6 gnu: python-pygsp: Update to 0.6.0.
add 0bf1c3acae gnu: python-graphtools: Update to 2.1.0.
add dac41e9f25 gnu: python-fcsparser: Use python-numpy@1.
add a7c487a04a gnu: Add python-scprep.
add f7c56e273e gnu: python-magic-impute: Update to 3.0.0.
add db7594b1fc gnu: python-cooltools: Update to 0.7.1.
add dcc7504145 gnu: python-cnmf: Update to 1.7.0.
add 69988a0d63 gnu: idr: Fix build.
add 8364dce5fd gnu: mageck: Use python-numpy@1.
add c94d575576 gnu: python-captum: Update to 0.8.0-0.4fade3a.
add 940fd33cad gnu: python-cellbender: Update to 0.3.2.
add 64714dcd17 gnu: macs-3: Update to 3.0.3.
add 8cd522db2b gnu: python-brian2: Update to 2.10.1.
add 80ea353362 gnu: python-presto: Improve package, fix tests.
add e0ee924579 gnu: Add python-apricot-select.
add d4ebd06e80 gnu: python-pomegranate: Update to 1.1.0.
add 5bddbae693 gnu: python-pomegranate: Move to machine-learning.
add 4a9ba2e094 gnu: python-pyfaidx: Update to 0.9.0.3.
add 80ccda6a0b gnu: cnvkit: Update to 0.9.12-0.52f367b.
add b80dbd7d43 gnu: piglit: Use python-numpy@1.
add 6a72d3c12f gnu: python-tdda: Skip one more test.
add c2aabd9cff gnu: python-deepdish: Use python-numpy@1.
add 8c36020e02 gnu: python-deeptools: Update to 3.5.6.
add 9448d50d2c gnu: python-funsor: Update to 0.4.6.
add 38b8260a4d gnu: python-mygene: Switch to pyproject.
add 02c6d0183f gnu: python-drep: Update to 3.6.2-0.7b4b8fb.
add b5a17d721a gnu: Add python-stregion.
add 2a45091b75 gnu: python-drizzlepac: Update to 3.10.0-0.e01563c.
add 393388cdd2 gnu: python-gizmo-analysis: Remove relax-requirements phase.
add 6cb925c92b gnu: python-sep: Remove relax-requirements phase.
add 90101deabb gnu: python-sncosmo: Adjust phases.
add bd11aa5b67 gnu: python-specreduce: Remove relax-requirements phase.
add b6081f0be5 gnu: python-utilities-awetzel: Remove relax-requirements
phase.
add 9769cd732c gnu: python-episcanpy: Use python-numpy@1.
add 065980a401 gnu: python-fenics-ufl-2019: Use python-numpy@1.
add 561736d94d gnu: python-fenics-ffc: Use python-numpy@1.
add 7f0bd3f662 gnu: Add python-xarray-dataclass.
add d1a8c4e9e9 gnu: python-multiscale-spatial-image: Update to 2.0.3.
add d47b0599a8 gnu: Remove python-xarray-datatree.
add acf979160c gnu: python-glue-qt: Relax requirements for ipython version.
add 783da5d08c gnu: python-papermill: Reduce closure size; skip 2 tests.
add a22c6e5a0d gnu: python-vector: Update to 1.7.0.
add 9de58fc285 gnu: python-scikit-learn-1.6: Skip 3 more tests.
add 0c9929cba8 gnu: boost-numpy: Use python-numpy@1.
add b54008bb08 gnu: rdkit: Use python-numpy@1.
add 0a414ebdf7 gnu: python-paramz: Use python-numpy@1.
add dbcc162116 gnu: python-gpy: Use python-numpy@1.
add f615918c5a gnu: python-paramz Move to machinve-learning.
add 9fd736235e gnu: python-pysynphot: Update to 2.0.0-1.a5e76c3.
add 977d394a7f gnu: python-spisea: Use python-numpy@1.
add e6bfded109 gnu: python-scikit-surprise: Use python-numpy@1.
add 7563764ca7 gnu: Add python-statannotations.
add f052e98ac7 gnu: dolphin-emu: Use python-numpy@1.
add 24c7e7b216 gnu: coda: Use python-numpy@1.
add 3c6ce6a457 gnu: python-dcor: Use python-numpy@1.
add 5890db37f3 gnu: python-hdf5storage: Use pythno-numpy@1.
add 4ddb326475 gnu: python-hic2cool: Fix tests.
add eedd7f6593 gnu: scvelo: Update to 0.3.3.
add 574ccf4251 gnu: python-sbpy: Skip one doc test.
add 132e7c9782 gnu: pigx-scrnaseq: Use python-numpy@1.
add c5671bbd44 gnu: python-hicmatrix: Update to 17.2.
add 40b416e4db gnu: python-pygenometracks: Update to 3.9.
add a3c54627cf gnu: python-pyamg: Update to 5.3.0.
add 7e01f6e7e6 gnu: python-muon: Use python-numpy@1.
add e6405cf095 gnu: python-salib: Update to 1.5.2.
add dd363c0a8e gnu: python-pyfma: Use python-numpy@1.
add cd1e264ccf gnu: python-accupy: Use python-numpy@1.
add 8fdd8431d9 gnu: python-quadpy: Use python-numpy@1.
add c44fd4362e gnu: python-imagecodecs: Fix build.
add bd3e9489e6 gnu: python-libneuroml: Update to 0.6.7.
add bbc9e77630 gnu: python-watchfiles: Update to 1.1.1.
add b05b0f47de gnu: Add python-narwhals-minimal.
add ffbac2a24c gnu: python-narwhals: Update to 2.15.0.
add 5fcf8b1ea7 gnu: python-pyreadstat: Update to 1.3.2.
add c5c6e88486 gnu: python-pypika-tortoise: Update to 0.6.3.
add c70f57c702 gnu: python-tortoise-orm: Update to 0.25.3.
add 6877a2a08a gnu: python-hyperopt: Fix build.
add 3c140efabb gnu: python-iced: Update to 0.6.0.
add 8b10e6a14b gnu: python-decoupler: Update to 2.1.2.
add 5295c9c379 gnu: python-liana-py: Update to 1.6.1.
add 633c46178f gnu: python-pandas-stubs: Update to 2.3.3.251219.
add 154302d75e gnu: python-pytoolconfig: Reduce closure size.
add 9b5ca72a37 gnu: python-lifelines: Simplify tests.
add ee5e65c98d gnu: python-pysm3: Relax requirements for NumPy and SciPy.
add 180d543faa gnu: python-mathics-core: Use python-numpy@1.
add b6666118f5 gnu: python-metpy: Update to 1.7.1.
add 49a311e7bd gnu: python-numpysane: Use python-numpy@1.
add 6ebda1bd38 gnu: python-orthopy: Use python-numpy@1.
add f4179e549b gnu: Add python-uuid6.
add bab4c9c0e7 gnu: python-deepdiff: Update to 8.6.1.
add d831b20781 gnu: python-pandapower: Update to 3.3.0.
add 897d05749e gnu: python-peaks2utr: Use python-numpy@1.
add 4ae773f7d2 gnu: python-perfplot: Use python-numpy@1.
add 0211e3228e gnu: Remove python-statannot.
add 7cc0e5db3f gnu: Remove python-watchgod.
add 73f325be05 gnu: Remove python-webbpsf.
add 1ccc5e3ea7 gnu: Remove ginga-qt5.
add dffb2b21a4 gnu: Remove fanc.
add 14cc5cf42f gnu: openmm: Update to 8.4.0.
add b73f110a19 gnu: Remove python-dask-expr.
add 2d73089676 gnu: python-scikit-survival: Update to 0.26.0.
add 7161915f03 gnu: python-scikit-survival: Fix indentation.
add f2b9ff86a8 gnu: python-phenograph: Fix tests.
add 26436fba55 gnu: python-pingouin: Fix tests.
add 716fe2f4da gnu: python-pot: Update to 0.9.6.post1.
add 2e32e4941e gnu: python-pyemd: Use python-numpy@1.
add c7a670c50f gnu: python-pygam: Update to 0.12.0.
add 1bbcad4a91 gnu: python-fastparquet: Update to 2025.12.0.
add 60b2a82ea1 gnu: python-pytensor: Update to 2.36.3.
add 442937f2f8 gnu: python-pymc: Update to 5.27.0.
add b0d9ec0e8b gnu: openmm: Remove shaky tests.
add 9b3596ad81 gnu: python-pymol: Use python-numpy@1.
add 22e9f44d9c gnu: Add c-stdaux.
add 0a1838450b gnu: Add c-siphash.
add e9d7f7fb0c gnu: Add python-siphash24.
add 86b67f9879 gnu: python-pytools: Add missing propagated inputs, enable
tests.
add 2423fa65d1 gnu: python-nanobind: Update to 2.10.2.
add 701285e293 gnu: python-pyopencl: Update to 2026.1.
add 8d33302263 gnu: python-pysat: Skip more tests.
add a8a5a87a02 gnu: python-statmorph: Use python-numpy@1.
add 592b53a573 gnu: python-petrofit: Reduce closure size.
add f09b06229d gnu: python-qutip: Update to 5.2.2.
add e01c9d917d gnu: Remove music21.
add f3e3d90f2b gnu: python-cylp: Update to 0.94.0.
add f402e25674 gnu: python-timezonefinder: Use python-numpy@1.
add 35dce1ef55 gnu: python-mysql-connector-python: Skip one more test.
add fd7898ef45 gnu: python-genomepy: Update to 0.16.3.
add 5e5e1b95c7 gnu: Remove python-aioredis.
add 069fdefec8 gnu: Remove python-pynbody-1.
add 93001fcbd0 gnu: python-sphinx-autodoc-typehints: Update to 2.3.0.
add 9c42493979 gnu: python-coolbox: Fix inputs.
add dcca820951 gnu: scregseg: Skip 'sanity-check phase.
add 8a77fdc3f9 gnu: python-drep: Skip additional test.
add 8d565c65d5 gnu: python-pgmpy: Ignore flaky tests.
add c2a6e6acd9 gnu: python-pyts: Update to 0.13.0-0.4f3d97b.
add 430b98bfaf gnu: python-pyvista: Ignore failing test.
add fae2a5bb8f gnu: python-daemon: Replace python-lockfile by
python-filelock.
add ba94b24f93 gnu: python-cachecontrol: Remove python-lockfile
propagated-input.
add b7f4cf4f46 gnu: duplicity: Remove python-lockfile propagated-input.
add 0dfbb0894d build-system: python: Accept pyproject
package-with-explicit-python.
add 920e8a7344 gnu: python2-pycparser: Migrate to pyproject and decouple.
add da484bd577 gnu: python2-cffi: Migrate to pyproject and decouple.
add dc540ecc37 gnu: python2-cffi: Move to (gnu packages pypy).
add 58b25cc90b gnu: python2-pycparser: Move to (gnu packages pypy).
add fb5b733fa4 gnu: kapidox: Switch to pyproject.
add 4ee5d75ff4 gnu: xpra: Switch to pyproject.
add 8a7939711c gnu: qspectrumanalyzer: Switch to pyproject.
add de3f863638 gnu: pass-rotate: Switch to pyproject.
add 0a70c5790f gnu: jupyter: Switch to pyproject.
add c28ec26998 gnu: python-ipydatawidgets: Switch to pyproject.
add 78f8e9d760 gnu: fp16: Switch to pyproject.
add e292f21d68 gnu: quodlibet: Switch to pyproject.
add ab3fd8a4e8 gnu: z3: Switch to pyproject.
add a60fa26e89 gnu: python-django-allauth: Update to 65.13.1.
add 0bf7327d0e gnu: m8c: Update to 2.2.2.
add b11c3483c3 gnu: magic: Update to 8.3.590.
add a3630fbf54 gnu: python-crossenv: Update to 1.6.1.
add 7622a9909e gnu: python-jinja2-time: Switch to pyproject.
add a906bfacc3 gnu: python-notify2: Switch to pyproject.
add 441fa7921c gnu: python-pebble: Update to 5.1.3.
add 8e7144b14b gnu: python-emoji-for-gh-md-to-html: Switch to pyproject.
add c704e61297 gnu: python-jellyfish: Update to 1.2.1.
add 6435bf8cb7 gnu: python-pypeg2: Switch to pyproject.
add 63fe654f4e gnu: python-jinja2-time: Disable tests.
add 33692180e3 gnu: python-pyinotify: Switch to pyproject.
add bca7df248f gnu: python-dbusmock: Update to 0.37.2.
add 2f24bf2d68 gnu: Add python-unicode-linebreak.
add d97c693963 gnu: Add python-md-ulb-pwrap.
add c635555165 gnu: Add python-importlib-metadata-argparse-version.
add 18b7f23ef3 gnu: python-pymd4c: Update to 1.3.0.
add f5761684c3 gnu: mdpo: Update to 2.1.4.
add 655ab0ea1a gnu: mkbootimg: Switch to copy-build-system.
add 9558fe34d6 gnu: python-libevdev: Update to 0.13.1.
add d94936546a gnu: gnome-plots: Switch to pyproject.
add 03fd94c437 gnu: python-pyinotify: Reduce package closure size.
add e7d84d121e gnu: temper-exporter: Switch to pyproject.
add efb7ad1816 gnu: patatt: Switch to pyproject.
add b8e1f00f70 gnu: python-biothings-client: Update to 0.4.1.
add b61896c4b8 gnu: shirah: Switch to pyproject.
add cfa2edf13b gnu: grokmirror: Update to 2.0.12.
add 94185c13d1 gnu: nml: Switch to pyproject.
add c2a75f4031 gnu: python-domain-connect: Remove unused inputs.
add 2c7f573aa3 gnu: python-scanrbp: Include data in package.
add 952213a987 gnu: python-brian2tools: Fix build.
add c24223714e gnu: python-sphinx-autoapi: Update to 3.6.1.
add c09c950658 gnu: Remove hdf-eos2.
add 42bf1e75f4 gnu: Remove hdf-eos5.
add 2562c798a1 gnu: Remove gctp.
add 3c4b143249 gnu: Remove python-hdf4.
add 39c28edb9d gnu: Remove python-pyhdf.
add 5ff090a2b9 gnu: hdf4-alt: Disinherit from hdf4.
add 5521cba2e9 gnu: Remove hdf4.
add 883fb1e942 gnu: coda: Remove hdf4 input.
add 64acb4e65d gnu: Remove hdf4-alt.
add d118a89d62 tests: Adjust to Guile 3.0.10+.
add a43d32577d gnu: guile: Add 3.0.11.
add a6306eb0bc gnu: Bump rocm to version 7.1.0
add 12021475e8 gnu: python-xsge: Switch to pyproject.
add f1d764a801 gnu: calibre: Update to 8.16.2.
add e42ad05e32 gnu: python-geosketch: Update to 1.3.
add 8ec85a9ddf gnu: python-ruffus: Switch to pyproject.
add 578911c3cb gnu: weechat-wee-slack: Update to 2.11.0.
add 8c54a0bd12 gnu: python-librecaptcha: Switch to pyproject.
add 09a04a7b15 gnu: terminator: Switch to pyproject.
add 5d3684a594 gnu: python-pygame: Update to 2.6.1.
add c51b16f3a0 gnu: python-jsonnet: Switch to pyproject.
add f65c0f780c gnu: assword: Rename to impass.
add 2e3469379b gnu: python-tmx: Switch to pyproject.
add e60a997f62 gnu: python-liana-py: Don't propagate python-numpydoc.
add 766ac5a306 gnu: python-pynetdicom: Don't propagate python-numpydoc.
add 41e8641379 gnu: python-scikit-misc: Don't propagate python-numpydoc.
add 9e6c31bb10 gnu: fastfetch-minimal: Update to 2.57.0
add 64c2c052a0 gnu: quodlibet: Fix operon GI path.
add 374a52656f gnu: Add go-github-com-lmittmann-tint.
add e0d72d83c3 gnu: darkman: Update to 2.3.0.
add cc0f8c7ea7 gnu: Add python-flask-paginate.
add e6d1f85a91 gnu: libcap-ng: Update to 0.9.
add 4f6d69b4a1 gnu: libxapp: Switch to pyproject.
add 8ca97597fd gnu: python-xapp: Drop uneeded arguments.
add 04365b11c2 gnu: gemmi: Switch to pyproject.
add 4acb4ce02e gnu: createrepo-c: Switch to pyproject.
add 733ec52b07 gnu: rdkit: Switch to pyproject.
add 14dd2be407 gnu: electron-cash: Switch to pyproject.
add 5050f87e59 gnu: sugar: Switch to pyproject.
add a599cda324 gnu: sugar-datastore: Switch to pyproject.
add 3cc8a0405b gnu: hplip: Switch to pyproject.
add 43f548eb74 gnu: h-client: Switch to pyproject.
add 79a8ef238e gnu: python-pandas-flavor: Update to 0.8.1.
add c7eb8d113d gnu: python-pyjanitor: Update to 0.32.5.
add 0415cedcb3 gnu: python-celery: Fix build on CI.
add 7571448719 gnu: python-click-plugins-1: Add a maintenance note.
add 747028c4bd gnu: python-kombu: Update to 5.6.0.
add eb3665d177 gnu: python-celery: Update to 5.6.2.
add ef18864eb2 gnu: ringdecomposerlib: Switch to pyproject.
add aa0c014b92 gnu: gmsh: Switch to pyproject.
add 40386bc4f9 gnu: syncplay: Switch to pyproject.
add ef95b788b8 gnu: flair: Switch to pyproject.
add 92724857d4 gnu: mercurial: Switch to pyproject.
add 96e0ca2d57 gnu: hg-commitsigs: Switch to pyproject.
add daef26271f gnu: python-pypairix: Fix package.
add 4347565cb8 gnu: python-pytorch: Switch to pyproject.
add 4b6427549c gnu: python-pyspoa: Switch to pyproject.
add 0fe1bdc5cc gnu: python-pyxel: Switch to pyproject.
add b95afcbdd8 gnu: python-brian2tools: Switch to pyproject.
add 0c961fd0c9 gnu: Remove sqlcrush.
add aa6b488cb2 gnu: Remove python-sqlalchemy-stubs.
add 4f03b2f931 gnu: python-flask-cors: Update to 6.0.2.
add ad6ad493c7 gnu: python-forbiddenfruit: Fix build.
add fee0a68ca4 gnu: python-lief: Update to 0.17.2.
add 4970394310 gnu: Remove python-islenska.
add 9665a8cdc6 gnu: Remove xxkb.
add 030bd035ae gnu: Remove emacs-nyxt.
add 16838140fe gnu: Remove nyxt.
add 60853eb21d gnu: Fix reproducibility for some TeX Live packages.
add 54b3e929fd gnu: texlive build system: Install info files and man pages.
add 91fd9c908f gnu: beanquery: Ignore failing tests.
add 58b167230a gnu: beancount-3: Update to 3.2.0.
add eaad0a367b gnu: emacs-beancount: Update to 0.9.0-0.8a564f5.
add 9bc8786d1a gnu: kwallet: Correct input for Qt6.
add e304821c9a gnu: kmailcommon: Correct input for Qt6.
add 55c5b966e5 gnu: kget: Add qpgme input.
add c217af2dd5 gnu: qgpgme: Rename to qgpgme-qt5.
add d21acaccfc gnu: qgpgme-qt6: Rename to qgpgme.
add 340b82f4a8 gnu: Add emacs-vulpea.
add 0ba879beb1 gnu: qpwgraph: Update to 0.9.8.
add 70d09f028e etc: Add csantosb to reproduciblebuilds team.
add 9aca0e65ab gnu: python-pyzmq: Do not run flaky tests.
add d1834aa48f gnu: Add projectm-eval.
add 3adc17cb0f gnu: Add projectm.
add 500bc6ee9f gnu: Add projectm-presets.
add 69d79647a9 gnu: imgui: Keep binary_to_compressed_c.cpp.
add 5d714dddd4 gnu: Add projectm-sdl.
add 0127eada65 gnu: Remove dataparksearch.
add e16c8fcb5f gnu: mailcap: Update to 2.1.54.
add a98c0d94e8 gnu: mailcap: Modernize package style.
add fceafe200b gnu: gnupg: Update to 2.4.8.
add 43edd27353 gnu: libssh2: Update to 1.11.1.
add b4df8b64f2 gnu: libressl: Update to 4.2.1.
add 4b64f7eb10 gnu: libfido2: Update to 1.16.0.
add cfbf244bc8 gnu: nettle: Modernize.
add c6f7aba33c gnu: nettle: Update to 3.10.2.
add ccba2021ab gnu: python-gnupg: Update to 0.5.6.
add 501b1cc31d gnu: pcsc-lite: Update to 2.4.0
add c714bcadd2 gnu: ccid: Switch to meson-build-system
add 4a3f1ea19a gnu: m8c: Update to 2.2.3.
add dfdc319fe0 gnu: Add m8c-serial.
add 3173ca013b gnu: manifold: Update to 3.3.2.
add 6726274b29 gnu: pagmo: Update dependency on tbb.
add 3553b20b34 gnu: r-quanteda: Update dependency on tbb.
add 251694ed44 gnu: r-terra: Update dependency on tbb.
add acc6b128df gnu: mu: Update to 1.12.15.
add 5114260fc1 gnu: dyninst: Update dependency on tbb.
add 023b437f62 gnu: mold: Update dependency on tbb.
add ad308791d5 gnu: openscad: Update dependency on tbb.
add d00b6b46fd gnu: python-blacksheep: Update to 2.4.6.
add 668a75cadd gnu: python-liberty-parser: Update to 0.0.29.
add b9f0fd3317 gnu: verilator: Update to 5.044.
add b93c02327c gnu: sby: Update to 0.61.
add 2c41409383 gnu: eqy: Update to 0.61.
add c2a0ac60b8 gnu: mcy: Update to 0.61.
add 97232dd64c gnu: iverilog: Update to 20251012.
add e45b7a0d54 gnu: emacs-consult: Update to 3.2.
add 55d38f72d8 gnu: emacs-substitute: Update to 0.5.0.
add 3a81395fb6 gnu: cpuinfo: Update to 0.0-7.c4b4f4b.
add 2ba11b6128 gnu: beancount: Remove and replace by beancount-3.
add 817bdc3f61 gnu: mariadb: Fix max nproc in tests.
add 6307f79c7b gnu: vcmi: Update dependency on tbb.
add e5b1210e4c gnu: python-openturns: Update dependency on tbb.
add 22db59d243 gnu: easyeffects: Update dependency on tbb.
add e940b42af3 gnu: libgit2: Set default version to 1.9.
add 9933f6d4f9 gnu: Replace libgit2-1.9 with default libgit2 where
possible.
add d10105e35e gnu: Replace libgit2-1.8 with default libgit2 where possible
add ce3d9e8498 gnu: sqlitebrowser: Update to 3.13.1.
add 664aca5c8f gnu: sqlitebrowser: Use system nlohmann-json.
add 4c38f7bd73 gnu: python-pygit2: Rename to python-pygit2-1.11.
add 28e4b5fec4 gnu: python-pygit2-1.18: Rename to python-pygit2.
add af04ced82a gnu: patman: Update input.
add e86cabe575 gnu: gallia: Update input.
add f804b63d22 gnu: python-pypeit: Update input
add bb4b81a5c1 gnu: offlate: Update input.
add 7dffe07f67 gnu: openpmix: Fix home-page.
add 36d7ff6a78 gnu: opencolorio: Update input.
add bf6fe60ca8 gnu: Add apache-parent-pom-33.
add d260db04e2 gnu: Add apache-commons-parent-pom-78.
add ecd2182563 gnu: Add java-commons-io 2.21.
add 072eae9260 gnu: Add java-mime4j-core.
add 594d95260e gnu: Add java-jakarta-activation-api.
add bee338a65d gnu: Add java-axiom-base64-utils.
add a3af62ab56 gnu: Add java-axiom-xml-utils.
add 40ea1290e0 gnu: Add java-axiom-core-streams.
add 86182c7a4e gnu: Add java-axiom-weaver-annotations.
add 5adceb2384 gnu: Add java-axiom-api.
add 0ea321dd0e gnu: Add java-axiom-core-mixins.
add bd7a260f61 gnu: Add java-axiom-om-mixins.
add a74b678a99 gnu: Add java-axiom-dom-mixins.
add b3aa022f69 gnu: Add java-axiom-impl.
add e23e427595 gnu: Add java-saxon-he-10.
add ba29ecdb84 doc: Fix an URL.
add b20bf71e6f doc: Small rewording.
add 3da67d6d68 doc: Add an URL link.
add 176d0f6e52 gnu: pocl: Apply style and modernize.
add 261c1e6215 gnu: pocl: Update to 6.0.
add 036e70b60e gnu: ocl-icd: Update to 2.3.4.
add dc4fec16c9 gnu: clinfo: Update to 3.0.25.02.14.
add 22a001c577 gnu: Remove python-cleanlab-1.
add d759f941ac gnu: Remove aegis.
add 9aece7afd8 gnu: Remove cook.
add ac3ddab6a4 gnu: Remove bison-3.0.
add dd2b2e0970 gnu: Remove python-monotonic.
add 2ec55af1af gnu: Remove curseradio.
add ac3172abea gnu: krita: Update to 5.2.14.
add 4e1e5a5f77 gnu: python-ctranslate2: Update input.
add ede197cbbf gnu: Remove pybind11-2.10.
add f94e0b5111 gnu: emacs-ellama: Update to 1.10.11.
add faeb7870ed gnu: emacs-consult: Update to 3.3.
add 2ed7a414c5 gnu: emacs-marginalia: Update to 2.8.
add cd14c63de0 gnu: cuirass: Update to 1.3.4.
add 9656718b3f gnu: Rename ‘amdgpu-targets’ property and related bindings.
add 300343d834 gnu: rocm: Export ‘%default-amd-gpu-targets’ and
‘current-amd-gpu-targets’.
add 062f036fec gnu: clang-rocm: Add ‘compiler-amd-gpu-targets’ property.
add 0c5d65d540 transformations: Add ‘--amd-gpu’ transformation option.
add 82bdf9731e gnu: grim: Update to 1.5.0.
add c4c4fb0974 gnu: grim: Improve style.
add 9807cf3d5b gnu: grim: Fix URL.
add a4810cfb36 gnu: swayidle: Update to 1.9.0.
add ecaf51e335 gnu: swayidle: Modernize package style.
add 43aea78517 gnu: wl-mirror: Update to 0.18.3.
add e21894a6d7 gnu: wl-mirror: Improve style.
add 0793019611 licenses: Add Academic Free License v3.0.
add eabfae628a gnu: prjpeppercorn: Update to 1.9.
add ae801bead6 gnu: prjtrellis: Update to 1.4-1.92345b7.
add 8feb7cfa72 gnu: nextpnr: Update to 0.9-1.d8117e3.
add a260700405 gnu: php: Update to 8.5.2.
add 196d18cecd gnu: librdkafka: Update to 1.6.1.
add 082676ff2f gnu: Remove python-tmx.
add ebcaf54d3c gnu: libgrapheme: Update to 3.0.0.
add 836d970497 gnu: dwm: Update to 6.7.
add b2900166d6 gnu: python-cleanlab: Update to 2.9.0.
add 9d33dce9ca gnu: Add emacs-vui.
add 35be51ed67 gnu: Add emacs-vulpea-ui.
add a625d0c005 gnu: modglue, cadabra: Add notes to avoid deletion.
add a9ce3573f6 gnu: packages/golang-xyz: Sort variables a->z.
add d4338ae713 gnu: Add go-github-com-yaslama-go-wayland-wayland.
add b21e64fccd gnu: Add go-github-com-wifx-gonetworkmanager-v2.
add a5542da871 gnu: Add go-github-com-go-git-go-billy-v6.
add f2f5d6b884 gnu: Add go-github-com-go-git-gcfg-v2.
add 3f14684121 gnu: Add go-github-com-go-git-go-git-v6.
add 631803ebb5 gnu: Add dank-material-shell.
add 5a23aaceb2 gnu: go-github-com-emersion-go-webdav: Update to 0.7.0.
add 39f90ecd67 gnu: sogogi: Update to 0.0.0-1.e6fd81c.
add 530bf82a24 gnu: Add go-webdav.
add 7b319b00ac gnu: miniflux: Update to 2.2.16.
add ee88784373 gnu: fntsample, guix: Fix cosmetic typos.
add 6a5dd96e75 gnu: Add r-qvcalc.
add 97a498bc6f gnu: Add r-nlstools.
add 4aca2414d3 gnu: r-testthat: Update to 3.3.1.
add a1d32c2499 gnu: r-yaml: Update to 2.3.11.
add 663a92309c gnu: r-box: Update to 1.2.1.
add e64df24200 gnu: r-cards: Update to 0.7.1.
add 00842d3c40 gnu: r-ggbeeswarm: Update to 0.7.3.
add 6a4ab82872 gnu: r-ggthemes: Update to 5.2.0.
add f91816a9cb gnu: r-gplots: Update to 3.3.0.
add 839893de10 gnu: r-rpresto: Update to 1.4.8.
add 465b228744 gnu: r-runner: Update to 0.4.5.
add 2a55fd07ef gnu: r-bestnormalize: Update to 1.9.2.
add 8435b7d59e gnu: r-lme4: Update to 1.1-38.
add 698a142cc1 gnu: r-ggpmisc: Update to 0.6.3.
add f076e58389 gnu: r-mirai: Update to 2.5.3.
add 52daabf806 gnu: r-ggtangle: Update to 0.0.9.
add 2db7ef3b22 gnu: r-bindr: Update to 0.1.3.
add 09de77c824 gnu: r-globaloptions: Update to 0.1.3.
add 26312a8f1e gnu: r-getoptlong: Update to 1.1.0.
add b882f5de44 gnu: r-piton: Update to 1.0.1.
add e7a096abe1 gnu: r-doby: Update to 4.7.1.
add b530d77608 gnu: r-performance: Update to 0.15.3.
add 3df2970897 gnu: r-yulab-utils: Update to 0.2.2.
add 0729c109ba gnu: r-text2vec: Update to 0.6.6.
add dc65dfa5f3 gnu: r-xml2: Update to 1.5.1.
add e342408f2b gnu: r-xgboost: Update to 3.1.2.1.
add ced69ea688 gnu: r-patrick: Update to 0.3.1.
add e787f5cda5 gnu: r-spatstat-linnet: Update to 3.4-0.
add 074f690a93 gnu: r-spatstat: Update to 3.5-0.
add e02406a412 gnu: r-tidypredict: Update to 1.0.0.
add 78cc5bf270 gnu: r-parsnip: Update to 1.4.0.
add 04474bb758 gnu: r-vroom: Update to 1.6.7.
add 3954e19db5 gnu: r-exactextractr: Update to 0.10.1.
add 101609d307 gnu: r-rsqlite: Update to 2.4.5.
add 26feb50b83 gnu: r-rlrsim: Update to 3.1-9.
add d53af4de1f gnu: r-parallelly: Update to 1.46.1.
add 10344b4faf gnu: r-reformulas: Update to 0.4.3.1.
add e3ea2f43ab gnu: r-isoband: Update to 0.3.0.
add c7d4e4bc5d gnu: r-vim: Update to 7.0.0.
add 04774fcb90 gnu: r-timeseries: Update to 4052.112.
add 6c73f22a20 gnu: r-xfun: Update to 0.55.
add bcd6b6f0f8 gnu: r-latex2exp: Update to 0.9.8.
add 38563c127a gnu: r-roi: Update to 1.0-2.
add a1b849ed1c gnu: r-catdata: Update to 1.2.5.
add 186c591b5e gnu: r-extradistr: Update to 1.10.0.1.
add c57744dbe8 gnu: r-dbscan: Update to 1.2.4.
add f0b92d0087 gnu: r-e1071: Update to 1.7-17.
add 53ac4e7fdb gnu: r-purrr: Update to 1.2.1.
add fe00a50f28 gnu: r-httr2: Update to 1.2.2.
add 321edaca57 gnu: r-htmltools: Update to 0.5.9.
add 2cf0fec6ee gnu: r-geos: Update to 0.2.5.
add db5f70e92f gnu: r-feather: Update to 0.4.0.
add 21427d6a3f gnu: r-rcpp: Update to 1.1.1.
add ed94b38947 gnu: r-ctrdata: Update to 1.25.1.
add 61891d5066 gnu: r-litedown: Update to 0.9.
add fb8d1fc850 gnu: r-loo: Update to 2.9.0.
add 3c9156661b gnu: r-redland: Update to 1.0.17-19.
add 9c6161baab gnu: r-later: Update to 1.4.5.
add 5c9c466e09 gnu: r-wk: Update to 0.9.5.
add 59da6ae98a gnu: r-yaml: Update to 2.3.12.
add 4d0d2ea4c5 gnu: r-aster: Update to 1.3-7.
add 9c45cc8386 gnu: r-yulab-utils: Update to 0.2.3.
add e2f63032fe gnu: r-futile-logger: Update to 1.4.9.
add 1a12ac96e8 gnu: r-paletteer: Update to 1.7.0.
add 1ff1103e9b gnu: r-microbiomestat: Update to 1.3.
add ba7779c5e0 gnu: r-maxlik: Update to 1.5-2.2.
add a1792e5c2f gnu: r-vcr: Update to 2.1.0.
add 9149b5065c gnu: r-glmmtmb: Disable one test.
add 133fc25167 gnu: r-rmapshaper: Add update note.
add 89197234ae gnu: r-shinystan: Update to 2.7.0.
add b5b9b095dc gnu: r-duckdb: Update to 1.4.3.
add b690606bbe gnu: r-testthat: Update to 3.3.2.
add fb85d7476d gnu: r-bh: Update to 1.90.0-1.
add 2de22b9a20 gnu: r-cpp11bigwig: Update to 0.1.3.
add c14c1e8ae3 gnu: r-valr: Update to 0.9.1.
add ea1ae54d67 gnu: r-mutoss: Update to 0.1-14.
add b8556421bc gnu: r-metap: Update to 1.13.
add 0a8302fac7 gnu: r-abn: Update to 3.1.13.
add d079862872 gnu: r-cardx: Update to 0.3.1.
add f1bb5ab76a gnu: r-collapse: Update to 2.1.6.
add e4933e3d53 gnu: r-data-table: Update to 1.18.0.
add b27b3d68b6 gnu: r-earth: Update to 5.3.5.
add c1a9bcf4cb gnu: r-ggfittext: Update to 0.10.3.
add 9a48992456 gnu: r-ggstats: Update to 0.12.0.
add 22f293e70d gnu: r-ggstatsplot: Update to 0.13.4.
add 34a1f16ab6 gnu: r-robslopes: Update to 1.1.4.
add cc8314bd71 gnu: r-climaemet: Update to 1.5.0.
add e44daed7e0 gnu: r-climatol: Update to 4.4-0.
add 9047e365b3 gnu: r-zoo: Update to 1.8-15.
add 418c375e90 gnu: r-ggvenndiagram: Update to 1.5.7.
add fdfd09a92a gnu: r-oompabase: Update to 3.2.11.
add 28452096c6 gnu: r-plotfunctions: Update to 1.5.
add 919f5ce815 gnu: r-plotmo: Update to 3.7.0.
add 4c83a898f7 gnu: r-plumber: Update to 1.3.2.
add db80a632a9 gnu: r-ga: Update to 3.2.5.
add e5872164b9 gnu: r-mclogit: Update to 0.9.15.
add bbb3bfc888 gnu: r-astsa: Update to 2.4.
add e6984b10e0 gnu: r-secretbase: Update to 1.1.0.
add 440f984d6e gnu: r-selectr: Update to 0.5-1.
add ba55f4e5f6 gnu: r-hmisc: Update to 5.2-5.
add 89ae83575e gnu: r-fastglm: Update to 0.0.4.
add eab214cbe7 gnu: r-mbess: Update to 4.9.42.
add 9928ee8d19 gnu: r-ggtangle: Update to 0.1.0.
add ab897e0013 gnu: r-rcppcctz: Update to 0.2.14.
add 77229a8fa5 gnu: r-rcppspdlog: Update to 0.0.24.
add ce20c94340 gnu: r-audio: Update to 0.1-12.
add e7b97b2523 gnu: r-circlize: Update to 0.4.17.
add 48632dcd5d gnu: r-proxy: Update to 0.4-29.
add 5bdf1486d9 gnu: r-lamw: Update to 2.2.6.
add 82639a1519 gnu: r-rmumps: Update to 5.2.1-36.
add 559e112380 gnu: r-knitr: Update to 1.51.
add e4768b1716 gnu: r-knitrbootstrap: Update to 1.0.4.
add 4e43f85e95 gnu: r-broom: Update to 1.0.11.
add 88f2d875bd gnu: r-statsexpressions: Update to 1.7.2.
add 64a935feae gnu: r-ordinal: Update to 2025.12-29.
add 060ea92092 gnu: r-mice: Update to 3.19.0.
add 5f4702881b gnu: r-trycatchlog: Update to 1.3.3.
add af0ae84b4f gnu: r-venndiagram: Update to 1.8.2.
add f64db5d53c gnu: r-nanoparquet: Update to 0.4.3.
add c9d3d8c382 gnu: r-statnet-common: Update to 4.13.0.
add f274b676ec gnu: r-tseries: Update to 0.10-59.
add 331f92da19 gnu: r-fbasics: Update to 4052.98.
add 186d7a5967 gnu: r-simdesign: Update to 2.22.
add 4e4c7cdf0a gnu: r-arules: Update to 1.7.13.
add 89d682d8ff gnu: r-fsa: Update to 0.10.1.
add e52a3bf2f1 gnu: r-ggseqlogo: Update to 0.2.2.
add b767cee286 gnu: r-ggsci: Update to 4.2.0.
add 30c7c004ef gnu: r-itsadug: Update to 2.5.
add 8c438dc784 gnu: r-pupillometryr: Update to 0.0.7.
add 08b403ba33 gnu: r-officer: Update to 0.7.2.
add ffcbead651 gnu: r-insight: Update to 1.4.4.
add 057213255b gnu: r-nodbi: Update to 0.14.0.
add a4789dc4a3 gnu: r-abcrf: Update to 2.0.
add b333552527 gnu: r-gam: Update to 1.22-7.
add 6f4d8f6765 gnu: r-superlearner: Update to 2.0-40.
add 76b8876c8c gnu: r-dofuture: Update to 1.1.3.
add e9b79d130b gnu: r-svdialogs: Update to 1.1.2.
add a0f38c5bf7 gnu: r-emmeans: Update to 2.0.1.
add 248a792b57 gnu: r-bayesplot: Update to 1.15.0.
add 5294b9ced0 gnu: r-tmb: Update to 1.9.19.
add 3269e44104 gnu: r-ggeffects: Update to 2.3.2.
add 918af2ce37 gnu: r-gert: Update to 2.3.1.
add 148e3cf339 gnu: r-mvabund: Update to 4.2.8.
add 72c7990c1a gnu: r-afex: Update to 1.5-1.
add 1f471ab3cd gnu: r-fmesher: Update to 0.6.1.
add 7d3e66597e gnu: r-tm: Update to 0.7-17.
add 81c1c9a5f1 gnu: r-tidytree: Update to 0.4.7.
add 9ca4a25e7d gnu: r-sparsevctrs: Update to 0.3.5.
add 16e2863b0b gnu: r-rncl: Update to 0.8.8.
add a96b474030 gnu: r-gmisc: Update to 3.1.0.
add 0754ebdb48 gnu: r-spam: Update to 2.11-3.
add 6e41b0e880 gnu: r-future-apply: Update to 1.20.1.
add 5e6510da07 gnu: r-shinybs: Update to 0.63.0.
add 8871e3ccfa gnu: r-testit: Update to 0.15.
add f222f4d63f gnu: r-msir: Update to 1.4.
add e313ab9528 gnu: r-lavaan: Update to 0.6-21.
add 78771bf196 gnu: r-pegas: Update to 1.4.
add e4e7053589 gnu: r-bqtl: Update to 1.0-39.
add 496d77e1af gnu: r-bookdown: Update to 0.46.
add 46223ce28b gnu: r-gggenes: Update to 0.6.0.
add d3dd4635c7 gnu: r-arrow: Update to 22.0.0.1.
add a37984cb9f gnu: r-sctransform: Update to 0.4.3.
add 7e0ab6c845 gnu: r-blme: Update to 1.0-7.
add 2fc2bd577e gnu: r-leidenbase: Update to 0.1.36.
add f69bdd6c18 gnu: r-terra: Update to 1.8-93.
add e0dcebdf85 gnu: r-lifecycle: Update to 1.0.5.
add bd5db2a339 gnu: r-r-devices: Update to 2.17.3.
add efb80131db gnu: r-hdrcde: Update to 3.5.0.
add cd4ccfc4c6 gnu: r-imager: Update to 1.0.8.
add b32d6fdbff gnu: r-anthropometry: Update to 1.21.
add 250777aec9 gnu: r-knn-covertree: Update to 1.1.
add 9b48a5cb49 gnu: r-forecast: Update to 9.0.0.
add 7f70978fdb gnu: r-polycor: Update to 0.8-2.
add 3e4fdb626c gnu: r-butcher: Update to 0.4.0.
add 81da836c19 gnu: r-rsconnect: Update to 1.7.0.
add 5e45e7bdc1 gnu: r-rstantools: Update to 2.6.0.
add f9b4c3a8bb gnu: r-kendall: Update to 2.2.2.
add 326a9d7ed2 gnu: r-projpred: Update to 2.10.0.
add ad1ed7dded gnu: r-shapforxgboost: Update to 0.2.0.
add ede81b0ad0 gnu: r-spatstat-utils: Update to 3.2-1.
add 303599d63e gnu: r-clusterr: Update to 1.3.6.
add 7b7b2843eb gnu: r-nanoarrow: Update to 0.7.0-2.
add 9b0307a75c gnu: r-tidypredict: Update to 1.0.1.
add e2d9336092 gnu: r-parsnip: Update to 1.4.1.
add 890a798651 gnu: r-infer: Update to 1.1.0.
add 104fddebc1 gnu: r-lsa: Update to 0.73.4.
add 74ce686a99 gnu: r-qtl: Update to 1.74.
add 52a3e818cf gnu: r-seuratobject: Update to 5.3.0.
add 51b1aea0bd gnu: r-seurat: Update to 5.4.0.
add 7939def51e gnu: r-mlr3: Update to 1.3.0.
add 38d07efb27 gnu: r-mlr3learners: Update to 0.14.0.
add e04b594559 gnu: r-mlr3tuning: Update to 1.5.1.
add 389ed2ffe5 gnu: r-highlight: Update to 0.5.2.
add 582493890a gnu: r-stars: Update to 0.7-0.
add 2a4f74b5a8 gnu: r-delaporte: Update to 8.4.3.
add f572aa40bc gnu: r-vgam: Update to 1.1-14.
add 2675b676f3 gnu: r-tesseract: Update to 5.2.4.
add 88bb27dfaa gnu: r-rlang: Update to 1.1.7.
add 90429f19d3 gnu: r-tibble: Update to 3.3.1.
add d5210bc405 gnu: r-rcpparmadillo: Update to 15.2.3-1.
add e425436bff gnu: r-tidyr: Update to 1.3.2.
add 4009873b78 gnu: Add r-tidydr.
add 37b9d1eef7 gnu: r-screpertoire: Update to 2.6.2.
add d2b0a27ac3 gnu: r-txdbmaker: Update to 1.6.2.
add 21e0bd0f6a gnu: r-reactome-db: Update to 1.95.0.
add a355b080e0 gnu: r-systempiperdata: Update to 2.14.2.
add 22d964d40b gnu: r-anvil: Update to 1.22.3.
add 9329c0d4dc gnu: r-atena: Update to 1.16.1.
add b6f740f96f gnu: r-escape: Update to 2.6.2.
add fffa724b3b gnu: r-immapex: Update to 1.4.3.
add 78373459d3 gnu: r-edger: Update to 4.8.2.
add dcf80d8d0e gnu: r-enhancedvolcano: Update to 1.28.2.
add e0b7dab6e0 gnu: r-genomeinfodb: Update to 1.46.2.
add 66f68a6c91 gnu: r-genomicranges: Update to 1.62.1.
add e66218ee15 gnu: r-gsva: Update to 2.4.4.
add bfcf7ddabd gnu: r-rcy3: Update to 2.30.1.
add 2398047ab3 gnu: r-rhdf5: Update to 2.54.1.
add efe27722d5 gnu: r-rtracklayer: Update to 1.70.1.
add e97d2001ef gnu: r-sesame: Update to 1.28.1.
add fa55e6d196 gnu: r-tcgautils: Update to 1.30.2.
add 3c5638193c gnu: r-transcriptr: Update to 1.38.3.
add 725bc1fedd gnu: r-spectra: Update to 1.20.1.
add 6a6efb9d7c gnu: r-systempiper: Update to 2.16.3.
add 6a8b446d0a gnu: r-tximport: Update to 1.38.2.
add 10134e4001 gnu: r-zellkonverter: Update to 1.20.1.
add 1dc8af9bce gnu: r-graph: Update to 1.88.1.
add 47a76c5c39 gnu: r-ggtree: Update to 4.0.4.
add 454c8a9693 gnu: r-fgsea: Update to 1.36.2.
add 9694b9e642 gnu: r-enrichplot: Update to 1.30.4.
add 448dc86928 gnu: r-clusterprofiler: Update to 4.18.4.
add 7ca8b99a34 gnu: r-yapsa: Update to 1.36.1.
add e72f0cdaa6 gnu: r-wppi: Update to 1.18.0.
add 9f298503bd gnu: r-flowcore: Update to 2.22.1.
add ea8f7de008 gnu: r-ggcyto: Update to 1.38.1.
add 41e55358ff gnu: r-flowworkspace: Update to 4.22.1.
add 9953fd5c28 gnu: r-variancepartition: Update to 1.40.1.
add 6cbb6a13ce gnu: r-ucsc-utils: Update to 1.6.1.
add 1f852c3ca5 gnu: r-bioccheck: Update to 1.46.3.
add c18bab03af gnu: r-s4arrays: Update to 1.10.1.
add 4957fe8545 gnu: r-h5mread: Update to 1.2.1.
add 18f562a346 gnu: r-sparsearray: Update to 1.10.8.
add 0cf641866f gnu: r-mscoreutils: Update to 1.22.1.
add 9e64120bd3 gnu: r-bayesspace: Update to 1.20.2.
add 723d092168 gnu: r-tximeta: Update to 1.28.1.
add 4847b6e749 gnu: r-msnid: Disable one test.
add 371b7a706f gnu: r-signac: Update to 1.16.0-1.f5a8411.
add d7d5770b54 gnu: Add r-rarr.
add 8996e7cfc3 gnu: r-zarrdataframe: Update to 0.0.0-2.84c7db2.
add 8762fea566 gnu: r-qs: Skip another test.
add bb776f53b1 gnu: r-pizzarr: Update to 0.1.0-2.5f47057.
add c927e30c3b gnu: r-zarrarray: Update to 1.0-2.3cc3e6a.
add 612312526f gnu: r-rnifti: Update to 1.9.0.
add 6bc9dc960c gnu: r-rcppannoy: Update to 0.0.23.
add 900790d326 gnu: r-manipulatewidget: Update to 0.11.2.
add 2913ba1ead gnu: r-vctrs: Update to 0.7.0.
add 3a062d3c17 gnu: r-stringdist: Update to 0.9.17.
add d4c16e84cd gnu: r-extradistr: Update to 1.10.0.2.
add da5b18d10c gnu: r-stringfish: Update to 0.18.0.
add ed1ea054c5 gnu: r-netgsa: Update to 4.0.7.
add ed3a37afd9 gnu: r-blob: Update to 1.3.0.
add 24093170b8 gnu: r-fpc: Update to 2.2-14.
add 285548c244 gnu: r-prabclus: Update to 2.3-5.
add 98fbe17329 gnu: r-benchmarkmedata: Update to 2.0.0.
add e968154525 gnu: r-clock: Update to 0.7.4.
add a3dc6a00af gnu: r-ggpp: Update to 0.6.0.
add db3f89a4c9 gnu: r-snowflakeauth: Update to 0.2.1.
add 845763623f gnu: r-survival: Update to 3.8-6.
add 2e72835133 gnu: r-polylabelr: Update to 1.0.0.
add bbac5c8c2e gnu: r-grandr: Update to 0.2.7.
add d51827d7b3 gnu: r-tglkmeans: Update to 0.5.8.
add ccc10b4e73 gnu: r-secretbase: Update to 1.1.1.
add 40b3b90780 gnu: r-ggtangle: Update to 0.1.1.
add 66e445448c gnu: r-rcppspdlog: Update to 0.0.26.
add 24c4e15e74 gnu: r-rcppthread: Update to 2.3.0.
add 863822dc4d gnu: r-ctrdata: Update to 1.26.0.
add cce9b04783 gnu: r-fastmatch: Update to 1.1-8.
add 9b5cf570a1 gnu: r-xfun: Update to 0.56.
add bf7ec2a30f gnu: r-rappdirs: Update to 0.3.4.
add 64f4214e75 gnu: r-renv: Update to 1.1.6.
add 75f7ba8ff3 gnu: r-factominer: Update to 2.13.
add adac4f16e7 gnu: r-officer: Update to 0.7.3.
add ea8493699a gnu: r-dofuture: Update to 1.2.0.
add 1d24ebf126 gnu: r-ggformula: Update to 1.0.1.
add 1c744a777a gnu: r-glmmtmb: Update to 1.1.14.
add 2014761357 gnu: r-lmertest: Update to 3.2-0.
add f6ff33cd56 gnu: r-isorix: Update to 0.9.4.
add 6ecc555e11 gnu: r-future: Update to 1.69.0.
add 94afee41fc gnu: r-shinyjs: Update to 2.1.1.
add 282d312b75 gnu: r-sf: Update to 1.0-24.
add 6d456ee473 gnu: r-xml2: Update to 1.5.2.
add 0b9dd7aaba gnu: r-xgboost: Update to 3.1.3.1.
add aecf542a48 gnu: r-alabama: Update to 2025.1.0.
add 197540a439 gnu: r-actfrag: Update to 0.1.2.
add 40090bb082 gnu: r-expint: Update to 0.2-0.
add 41372bd54b gnu: r-rcdd: Update to 1.6-1.
add 4a87aea9a9 gnu: r-distributional: Update to 0.6.0.
add 5b7dbc55ca gnu: r-spatstat-univar: Update to 3.1-6.
add 4e1b351efa gnu: r-warp: Update to 0.2.3.
add 004d0fafd4 gnu: r-lwgeom: Update to 0.2-15.
add a8a80ea636 gnu: r-paws-common: Update to 0.8.8.
add a73ed64983 gnu: r-rstudioapi: Update to 0.18.0.
add 41b134a865 gnu: r-segmented: Update to 2.2-0.
add 3f9b6c9e25 gnu: r-ranger: Update to 0.18.0.
add e90b7a88b0 gnu: r-flames: Update to 2.4.2.
add 1508dd68d1 gnu: r-pcatools: Update to 2.22.1.
add 449523415a gnu: Add font-sligoil.
add f176e6a8f3 gnu: awesome: Add missing input.
add 58e6f24e42 gnu: python-internetarchive: Update to 5.7.1.
add ee17577b6e gnu: flatpak: Update to 1.16.3.
add bb898f243a gnu: Add osslsigncode.
add b5730042bf gnu: qmk: Update to 1.2.0.
add 50ebdec2de gnu: mariadb-embedded: Change the name field to match the
variable name.
add bfd13653ee gnu: python-kubernetes: Update to 35.0.0.
add 7c620d0c75 gnu: ieee-p1076: Fix paths.
add e2840c2126 gnu: Add neorv32.
add d90a8d774c gnu: Add level-zero.
add 5b6e622c72 gnu: Add umf.
add 89bd110b82 gnu: qemu-for-aflplusplus: Update to 5.2.50-1.60ebd56.
add ec46166949 gnu: aflplusplus: Update to 4.35c.
add 6403a166e6 gnu: emacs-general: Update to 0.1-0.a48768f.
add f4e6632510 gnu: emacs-evil-mc: Update to 0.0.4-0.7e363dd.
add 0eb1418d36 gnu: emacs-nerd-icons: Update to 0.1.0-2.d41902f.
add a63f4ac078 gnu: prosody-rest: New package.
add 2cfa76933e gnu: i3-wm: Update to 4.25.
add 5708b95291 gnu: akonadi: Correct input for Qt6.
add 02d6246c3d gnu: libaccounts-qt6: Correct input for Qt6.
add 14a04f0d78 gnu: libaccounts-qt6: Disinherit from libaccounts-qt.
add 8384dc2e6e gnu: plasma-desktop: Remove outdated input.
add f00df02125 gnu: xpra: Update to 6.4.1.
add 5610c76d04 gnu: ctranslate2: Update to 4.6.3.
add c118224197 gnu: Remove oneapi-dnnl.
add c1f845e6c4 gnu: libredwg: Update to 0.13.3.
add 125ba5c989 gnu: swappy: Update to 1.8.0.
add fffac211a8 gnu: r-stringfish: Fix phases.
add 3c9e04c9b3 gnu: tree-sitter-vhdl: Update to 1.3.1.
add da849a9145 gnu: gerbera: Update to 3.0.0.
add e422aad214 gnu: ttf2pt1: Fix compilation with glibc 2.41.
add d34aff1f7e gnu: ttf2pt1: Modernize.
add 92e2e4816c artwork: Update commit.
add a4d39d2cbe build: test-driver.scm: Fix test-reporting with guile
3.0.11.
add 817ff57604 gnu: jaro: Set paths.
add ef24686b20 gnu: unity-test: Add option for supporting 64bit integers.
add 9af25edaaf gnu: clojure: Update to 1.12.4.
add 441819989d gnu: clojure-tools: Update to 1.12.4.1582.
add 86074438e1 gnu: clojure-tools-deps: Update to 0.28.1569.
add 8e75c6c1f1 gnu: clojure-tools-deps: Default to local clojure jar.
add 279616da6d gnu: clojure-tools: Add missing SLF4J logger implementation.
add 3701dc9bea gnu: Add cognitect-aws-api.
add 9ce0a1fe0b gnu: Add clojure-java-classpath.
add 63e9052aaf gnu: Add clojure-spec-alpha.
add eb61e0ce4a gnu: Add clojure-core-specs-alpha.
add d1a82fdf81 gnu: Add clojure-data-generators.
add 6872ff5cf0 gnu: Add clojure-tools-namespace.
add 0baede4918 gnu: Add clojure-test-generative.
add d41ad7d148 gnu: clojure: Reference existing packages.
add da3d6a5f3f gnu: clojure-core-cache: Update to 1.2.249.
add 1af65e7ff6 gnu: clojure-algo-generic: Update to 1.0.1.
add 482ef8e183 gnu: clojure-data-json: Update to 2.5.2.
add 55a9281ad0 gnu: http-kit: Update to 2.8.1.
add 8b69e1f800 gnu: clojure-tools-logging: Update to 1.3.1.
add 6c004555a8 gnu: clojure-tools-gitlibs: Update to 2.6.212.
add 41a3697370 gnu: clojure-test-check: Update to 1.1.3.
add c6ad769066 gnu: clojure-tools-reader: Update to 1.6.0.
add 0e8ce5b843 gnu: clojure-algo-monads: Update to 0.2.1.
add 51d6836386 gnu: clojure-core-async: Update to 1.8.741.
add 4d92faf72d gnu: clojure-core-match: Update to 1.1.1.
add b9a7ae6380 gnu: clojure-core-memoize: Update to 1.2.273.
add ce091b777d gnu: clojure-data-codec: Update to 0.2.1.
add d6f3d16b2c gnu: clojure-data-csv: Update to 1.1.1.
add f456d552fe gnu: clojure-data-priority-map: Update to 1.2.1.
add b2558646b9 gnu: clojure-data-xml: Update to 0.2.0-alpha10.
add 86919a3b43 gnu: clojure-tools-analyzer: Update to 1.2.1.
add 0e6b1117eb gnu: clojure-tools-analyzer-jvm: Update to 1.3.4.
add e3de09d839 gnu: clojure-tools-macro: Update to 0.2.2.
add 7968a75031 gnu: clojure-tools-cli: Update to 1.3.250.
add bea1874d98 gnu: clojure-tools-deps-alpha: Update to 0.15.1254.
add d25166c06d gnu: libgit2: Fix tests on 32bit systems.
add b44103c0d3 gnu: endless-sky: Update to 0.10.16.
add 8d167feaaf gnu: Add spdlog-1.14.
add 3ffa19fabb gnu: level-zero: Fix inputs and licenses.
add 5770aad73f gnu: hyprlang: Update to 0.6.8.
add 9b000588b4 gnu: hyprtoolkit: Update to 0.5.3.
add 2e11c3e1b5 gnu: Add glaze.
add e72ccef566 gnu: hyprland: Update to 0.53.3.
add b57b68aba6 gnu: open-logic: Move to hdl
add f3d2705f64 gnu: ieee-p1076: Move to hdl.
add 8bb9658d7b gnu: open-logic: Update to 4.3.0.
add ad9d4f1793 gnu: opencascade-occt-7.6.1: Do not inherit.
add 891f268fe8 gnu: opencascade-occt: Update to 7.9.3.
add d772038084 gnu: freecad: Update dependency on tbb.
add b989e0138e gnu: koboldcpp: Update to 1.106.2.
add 28ce4eae6b doc: cookbook: Update for unprivileged guix-daemon
execution.
add 085c6e6583 doc: cookbook: Recommend systemd timer for ‘guix gc’.
add 997dd3aa51 doc: cookbook: Don’t insist on mounting home directories on
the head node.
add d7e71dad6d doc: Fix hello package example.
add 1d9cf8758e gnu: gdb: Enable scripting when cross compiling.
add 64429ac586 Revert "gnu: gdb: Enable scripting when cross compiling."
add 40298c2071 gnu: python-numpy: Fix build on powerpc64le-linux.
new 5b7003314f gnu: rust: Delete extra files in install phase.
new 947d901e57 gnu: Add rust-1.89.
new 472cd8d82d gnu: Add rust-1.90.
new cfa6318cf2 gnu: rust: Update to 1.90.
new 6e0c66559e gnu: rust: Fix native-search-paths specifications.
new 8e4431cb18 gnu: rust: Enable more tests.
new 6761ce05ac gnu: rust: Don't skip extra tests on aarch64-linux.
new d2ed4b1f77 gnu: rust: Add a search path for the rust sources.
new 100abec1f3 gnu: Add rust-salsa-0.23.0.3713cd7.
new 1348f8fb8c gnu: Add ruff.
new 719149e0fd gnu: ruff: Install shell completions.
new b88d976ff0 gnu: rust-crates: Remove some precompiled libraries.
new 4ca2c5b4f6 gnu: yabridgectl: Use newer cargo dependencies.
new d3df37ab2b gnu: make-rust-sysroot: Update for rust-1.90.
new 71f6e64afa gnu: rust: Don't keep a reference to previous rust version.
This update added new revisions after undoing existing revisions.
That is to say, some revisions that were in the old version of the
branch are not in the new version. This situation occurs
when a user --force pushes a change and generates a repository
containing something like this:
* -- * -- B -- O -- O -- O (fb41a05b3c)
\
N -- N -- N refs/heads/rust-team (71f6e64afa)
You should already have received notification emails for all of the O
revisions, and so the following emails describe only the N revisions
from the common base, B.
Any revisions marked "omit" are not gone; other references still
refer to them. Any revisions marked "discard" are gone forever.
The 15 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
CODEOWNERS | 1 +
Makefile.am | 1 +
build-aux/test-driver.scm | 4 +-
doc/guix-cookbook.texi | 55 +-
doc/guix.texi | 74 +-
etc/teams.scm | 3 +-
gnu/artwork.scm | 4 +-
gnu/bootloader.scm | 11 +-
gnu/local.mk | 28 +-
gnu/packages/admin.scm | 144 +-
gnu/packages/aidc.scm | 45 +-
gnu/packages/algebra.scm | 2 +-
gnu/packages/android.scm | 29 +-
gnu/packages/astronomy.scm | 780 +++---
gnu/packages/audio.scm | 129 +-
gnu/packages/backup.scm | 2 +-
gnu/packages/bioconductor.scm | 282 +-
gnu/packages/bioinformatics.scm | 1629 ++++++-----
gnu/packages/bison.scm | 13 -
gnu/packages/books.scm | 3 +-
gnu/packages/boost.scm | 2 +-
gnu/packages/build-tools.scm | 139 +-
gnu/packages/c.scm | 54 +
gnu/packages/check.scm | 79 +-
gnu/packages/chemistry.scm | 309 ++-
gnu/packages/ci.scm | 4 +-
gnu/packages/cinnamon.scm | 64 +-
gnu/packages/clojure.scm | 595 ++--
gnu/packages/compression.scm | 4 +-
gnu/packages/cook.scm | 91 -
gnu/packages/cpp.scm | 42 +-
gnu/packages/cran.scm | 1289 +++++----
gnu/packages/crypto.scm | 29 +
gnu/packages/cups.scm | 190 +-
gnu/packages/cybersecurity.scm | 2 +-
gnu/packages/databases.scm | 187 +-
gnu/packages/debug.scm | 10 +-
gnu/packages/disk.scm | 4 +-
gnu/packages/django.scm | 29 +-
gnu/packages/djvu.scm | 47 +-
gnu/packages/documentation.scm | 1 -
gnu/packages/duckdb.scm | 6 +-
gnu/packages/ebook.scm | 50 +-
gnu/packages/electronics.scm | 295 +-
gnu/packages/emacs-xyz.scm | 187 +-
gnu/packages/emulators.scm | 2 +-
gnu/packages/engineering.scm | 225 +-
gnu/packages/file-systems.scm | 60 +-
gnu/packages/finance.scm | 197 +-
gnu/packages/firmware.scm | 4 +-
gnu/packages/fonts.scm | 32 +-
gnu/packages/fontutils.scm | 58 +-
gnu/packages/freedesktop.scm | 35 +-
gnu/packages/fusion.scm | 96 +
gnu/packages/game-development.scm | 176 +-
gnu/packages/games.scm | 29 +-
gnu/packages/geo.scm | 59 +-
gnu/packages/gettext.scm | 41 +-
gnu/packages/gl.scm | 2 +-
gnu/packages/gnome-xyz.scm | 42 +-
gnu/packages/gnome.scm | 111 +-
gnu/packages/gnupg.scm | 57 +-
gnu/packages/golang-vcs.scm | 49 +
gnu/packages/golang-xyz.scm | 566 ++--
gnu/packages/gps.scm | 9 +-
gnu/packages/graph.scm | 117 +-
gnu/packages/graphics.scm | 2 +-
gnu/packages/guile-xyz.scm | 18 +
gnu/packages/guile.scm | 52 +-
gnu/packages/hardware.scm | 13 +-
gnu/packages/hdl.scm | 193 ++
gnu/packages/hurd.scm | 4 +-
gnu/packages/image-processing.scm | 2 +-
gnu/packages/image-viewers.scm | 7 +-
gnu/packages/image.scm | 51 +-
gnu/packages/instrumentation.scm | 4 +-
gnu/packages/jami.scm | 2 +-
gnu/packages/java-xml.scm | 268 ++
gnu/packages/java.scm | 82 +
gnu/packages/jupyter.scm | 350 ++-
gnu/packages/kde-education.scm | 7 +-
gnu/packages/kde-frameworks.scm | 11 +-
gnu/packages/kde-graphics.scm | 6 +-
gnu/packages/kde-internet.scm | 14 +-
gnu/packages/kde-pim.scm | 16 +-
gnu/packages/kde-plasma.scm | 3 +-
gnu/packages/kde-utils.scm | 4 +-
gnu/packages/libffi.scm | 22 +-
gnu/packages/libunistring.scm | 13 +-
gnu/packages/llvm.scm | 435 ++-
gnu/packages/logging.scm | 18 +
gnu/packages/machine-learning.scm | 698 +++--
gnu/packages/mail.scm | 42 +-
gnu/packages/maths.scm | 770 +++---
gnu/packages/maven-parent-pom.scm | 10 +
gnu/packages/messaging.scm | 73 +-
gnu/packages/mold.scm | 8 +-
gnu/packages/monitoring.scm | 37 +-
gnu/packages/music.scm | 101 +-
gnu/packages/nettle.scm | 61 +-
gnu/packages/networking.scm | 4 +-
gnu/packages/oneapi.scm | 100 +
gnu/packages/opencl.scm | 164 +-
gnu/packages/package-management.scm | 12 +-
gnu/packages/parallel.scm | 10 +-
gnu/packages/password-utils.scm | 41 +-
gnu/packages/patches/aegis-constness-error.patch | 12 -
gnu/packages/patches/aegis-perl-tempdir1.patch | 14 -
gnu/packages/patches/aegis-perl-tempdir2.patch | 18 -
gnu/packages/patches/aegis-test-fixup-1.patch | 15 -
gnu/packages/patches/aegis-test-fixup-2.patch | 24 -
.../patches/bmake-run-check-separately.patch | 26 +
gnu/packages/patches/gnumach-kmsg-overflow.patch | 59 +
.../patches/guile-3.0.11-cross-compilation.patch | 29 +
gnu/packages/patches/hurd-streamio-select.patch | 88 +
...bmaus2-fix-gcc-13-require-include-cstdint.patch | 24 +
gnu/packages/patches/nextpnr-gtest.patch | 30 -
.../patches/python-daemon-relax-lockfile.patch | 249 ++
...ython-matplotlib-fix-legend-loc-best-test.patch | 84 -
.../patches/python-pyreadstat-link-libiconv.patch | 7 +-
gnu/packages/patches/python-scipy-i686.patch | 49 -
...ython-xmp-toolkit-add-missing-error-codes.patch | 51 -
.../patches/rocclr-5.6.0-enable-gfx800.patch | 4 +-
...ndwidth-test-fix-external-packages-search.patch | 58 +
...andwidth-test-fix-hsa-include-file-lookup.patch | 16 +
...h-test-take-default-gpus-from-environment.patch | 29 +
.../patches/rocm-opencl-runtime-4.3-noclinfo.patch | 8 +-
.../patches/unity-test-support-int64.patch | 47 +
...tall_libs.patch => xpra-6.4-install_libs.patch} | 26 +-
...ystemd-run.patch => xpra-6.4-systemd-run.patch} | 11 +-
gnu/packages/php.scm | 4 +-
gnu/packages/prolog.scm | 4 +-
gnu/packages/protobuf.scm | 2 +-
gnu/packages/pypy.scm | 84 +-
gnu/packages/python-build.scm | 26 +-
gnu/packages/python-check.scm | 217 +-
gnu/packages/python-compression.scm | 43 +-
gnu/packages/python-graphics.scm | 35 +-
gnu/packages/python-science.scm | 2539 +++++++++--------
gnu/packages/python-web.scm | 181 +-
gnu/packages/python-xyz.scm | 2535 +++++++++--------
gnu/packages/qt.scm | 46 +-
gnu/packages/radio.scm | 29 +-
gnu/packages/rocm.scm | 484 ++--
gnu/packages/rpm.scm | 34 +-
gnu/packages/ruby-xyz.scm | 2 +-
gnu/packages/rust-crates.scm | 2839 ++++++++++++--------
gnu/packages/rust.scm | 16 +-
gnu/packages/sagemath.scm | 11 +
gnu/packages/search.scm | 55 -
gnu/packages/security-token.scm | 62 +-
gnu/packages/simulation.scm | 41 +-
gnu/packages/sphinx.scm | 64 +-
gnu/packages/ssh.scm | 31 +-
gnu/packages/statistics.scm | 425 +--
gnu/packages/suckless.scm | 29 +-
gnu/packages/sugar.scm | 189 +-
gnu/packages/terminals.scm | 26 +-
gnu/packages/tex.scm | 4 +-
gnu/packages/texlive.scm | 403 +--
gnu/packages/time.scm | 24 +-
gnu/packages/tls.scm | 4 +-
gnu/packages/toolkits.scm | 3 +-
gnu/packages/tree-sitter.scm | 12 +
gnu/packages/upnp.scm | 21 +-
gnu/packages/version-control.scm | 411 ++-
gnu/packages/video.scm | 106 +-
gnu/packages/web-browsers.scm | 131 -
gnu/packages/web.scm | 58 +-
gnu/packages/wget.scm | 4 +-
gnu/packages/wm.scm | 155 +-
gnu/packages/xdisorg.scm | 54 +-
gnu/packages/xorg.scm | 46 +-
gnu/system/hurd.scm | 4 +-
gnu/system/image.scm | 23 +-
gnu/tests/audio.scm | 1 +
guix/build-system/python.scm | 5 +-
guix/build/texlive-build-system.scm | 17 +-
guix/describe.scm | 22 +
guix/git-authenticate.scm | 25 +-
guix/import/{kde.scm => apache.scm} | 129 +-
guix/import/utils.scm | 9 +-
guix/inferior.scm | 2 +-
guix/licenses.scm | 7 +-
guix/platform.scm | 7 +-
guix/transformations.scm | 105 +-
guix/upstream.scm | 9 +-
manifest.scm | 1 +
po/packages/POTFILES.in | 2 +-
tests/file-systems.scm | 2 +
tests/services/file-sharing.scm | 3 +
tests/store.scm | 6 +-
tests/style.scm | 12 +-
tests/toml.scm | 16 +-
tests/transformations.scm | 41 +-
195 files changed, 14754 insertions(+), 10804 deletions(-)
delete mode 100644 gnu/packages/cook.scm
create mode 100644 gnu/packages/fusion.scm
create mode 100644 gnu/packages/hdl.scm
delete mode 100644 gnu/packages/patches/aegis-constness-error.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir1.patch
delete mode 100644 gnu/packages/patches/aegis-perl-tempdir2.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-1.patch
delete mode 100644 gnu/packages/patches/aegis-test-fixup-2.patch
create mode 100644 gnu/packages/patches/bmake-run-check-separately.patch
create mode 100644 gnu/packages/patches/gnumach-kmsg-overflow.patch
create mode 100644 gnu/packages/patches/guile-3.0.11-cross-compilation.patch
create mode 100644 gnu/packages/patches/hurd-streamio-select.patch
create mode 100644
gnu/packages/patches/libmaus2-fix-gcc-13-require-include-cstdint.patch
delete mode 100644 gnu/packages/patches/nextpnr-gtest.patch
create mode 100644 gnu/packages/patches/python-daemon-relax-lockfile.patch
delete mode 100644
gnu/packages/patches/python-matplotlib-fix-legend-loc-best-test.patch
delete mode 100644 gnu/packages/patches/python-scipy-i686.patch
delete mode 100644
gnu/packages/patches/python-xmp-toolkit-add-missing-error-codes.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-fix-external-packages-search.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-fix-hsa-include-file-lookup.patch
create mode 100644
gnu/packages/patches/rocm-bandwidth-test-take-default-gpus-from-environment.patch
create mode 100644 gnu/packages/patches/unity-test-support-int64.patch
rename gnu/packages/patches/{xpra-6.1-install_libs.patch =>
xpra-6.4-install_libs.patch} (70%)
rename gnu/packages/patches/{xpra-6.0-systemd-run.patch =>
xpra-6.4-systemd-run.patch} (86%)
copy guix/import/{kde.scm => apache.scm} (51%)
