branch master updated: gnu: scvelo: Deprecate in favor of python-scvelo.

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     new 068c60cf75 gnu: scvelo: Deprecate in favor of python-scvelo.
068c60cf75 is described below

commit 068c60cf75ba0cfeead782712ff9e991d4d4140b
Author: Nguyễn Gia Phong <c...@loang.net>
AuthorDate: Fri Jan 30 23:24:45 2026 +0900

    gnu: scvelo: Deprecate in favor of python-scvelo.
    
    * gnu/packages/bioinformatics.scm (python-scvelo): New variable.
      (scvelo): Deprecate in favor of python-scvelo.
      (r-netid)[propagated-inputs], (python-multivelo)[propagated-inputs]:
      Replace scvelo with python-scvelo.
    
    Change-Id: I45160537670785682e7d8a9333952b7105dc8c1f
    Signed-off-by: Andreas Enge <andr...@enge.fr>
---
 gnu/packages/bioinformatics.scm | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2e7d485e18..85a46e52a4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1398,7 +1398,7 @@ RNA-seq or spatial transcriptomics.")
                                python-anndata
                                python-geosketch
                                python-scanpy
-                               scvelo))
+                               python-scvelo))
       (native-inputs (list r-knitr))
       (home-page "https://github.com/WWXkenmo/NetID_package";)
       (synopsis
@@ -17541,10 +17541,10 @@ t-SNE algorithm.  The implementation is described 
here:
            python-scanpy
            python-scikit-learn
            python-scipy
+           python-scvelo
            python-seaborn
            python-tqdm
-           python-umap-learn
-           scvelo))
+           python-umap-learn))
     (home-page "https://github.com/welch-lab/MultiVelo";)
     (synopsis "Velocity inference from single-cell multi-omic data")
     (description "MultiVelo uses a probabilistic latent variable model to
@@ -24382,9 +24382,9 @@ aligner.")
     ;; bwa itself is licenced under GNU General Public License v3.0.
     (license license:mpl2.0)))
 
-(define-public scvelo
+(define-public python-scvelo
   (package
-    (name "scvelo")
+    (name "python-scvelo")
     (version "0.3.3")
     (source
      (origin
@@ -24443,6 +24443,9 @@ adapts RNA velocity to widely varying specifications 
such as non-stationary
 populations.")
     (license license:bsd-3)))
 
+(define-deprecated-package scvelo
+  python-scvelo)
+
 (define-public scregseg
   ;; 0.1.3 was released in 2023, there are a lot of comparability fixes on
   ;; master branch, use the latest commit for now.