guix_mirror_bot pushed a change to branch master
in repository guix.
from d780d3e11b gnu: watchdogd: Update to 4.1.
new 89fd9cd359 gnu: vtk: Update to 9.6.0 and add vtk-9.5.
new d664fadd7e gnu: r-randomforestsrc: Update to 3.5.0.
new eec58c78fd gnu: r-bedr: Update to 1.1.5.
new 080d0232d9 gnu: apache-arrow: Update to 23.0.0.
new fa6f629d22 gnu: r-arrow: Update to 23.0.0.
new 44e80842c7 gnu: r-ggiraph: Update to 0.9.3.
new 4e11c66b1e gnu: r-misctools: Update to 0.6-30.
new 853b258522 gnu: r-tfmpvalue: Update to 1.0.0.
new 6dd4497f63 gnu: Add js-mathjax-4.
new 2241946157 gnu: r-mathjaxr: Update to 2.0-0.
new 07257b4d18 gnu: r-bbmisc: Update to 1.13.1.
new 2d9edcfb13 gnu: r-castor: Update to 1.8.5.
new 0068b61e3c gnu: r-collections: Update to 0.3.10.
new 9d86a653dc gnu: r-plotly: Update to 4.12.0.
new 8cdae95416 gnu: r-zcompositions: Update to 1.6.0.
new 8ab524f794 gnu: r-minty: Update to 0.0.6.
new 7ad188bfd2 gnu: r-ptw: Update to 1.9-17.
new 684d4b5f77 gnu: r-fitdistrplus: Update to 1.2-6.
new 97b9595576 gnu: r-kit: Update to 0.0.21.
new f0c56aa0ad gnu: r-linprog: Update to 0.9-6.
new 0e1b6db5b7 gnu: r-vctrs: Update to 0.7.1.
new 0547b4ea5d gnu: r-uuid: Update to 1.2-2.
new e47400d0cb gnu: r-ncdfcf: Update to 0.8.0.
new 361e558211 gnu: r-adbcdrivermanager: Update to 0.22.0.
new 0c6b1f1b21 gnu: r-rbibutils: Update to 2.4.1.
new 44950f8061 gnu: r-rdpack: Update to 2.6.5.
new 432f9793d5 gnu: r-insight: Update to 1.4.5.
new a077f6e14b gnu: r-hash: Update to 2.2.6.4.
new 63eb990d8d gnu: r-blavaan: Update to 0.5-10.
new d1ded4b169 gnu: r-quickjsr: Update to 1.9.0.
new b78f978416 gnu: r-rnaturalearth: Update to 1.2.0.
new 26ff46a294 gnu: r-rncl: Update to 0.8.9.
new 1d57912533 gnu: r-kohonen: Update to 3.0.13.
new b4671dac23 gnu: r-rjava: Update to 1.0-14.
new 2687aca005 gnu: r-gbm: Update to 2.2.3.
new 94b08e55da gnu: r-scrime: Update to 1.3.7.
new 782cc9887a gnu: r-kmer: Update to 1.1.3.
new 72dd525be8 gnu: r-spatstat-explore: Update to 3.7-0.
new d8dc5e606d gnu: r-spatstat-geom: Update to 3.7-0.
new 40e3d758d5 gnu: r-spatstat-random: Update to 3.4-4.
new 403d3b96a4 gnu: r-cpp11: Update to 0.5.3.
new d95fd4328b gnu: r-textplot: Update to 0.2.3.
new a0984b9160 gnu: r-qs2: Update to 0.1.7.
new 447fd9e539 gnu: r-rocr: Update to 1.0-12.
new 406d37a277 gnu: r-sn: Update to 2.1.2.
new c4bd0eed04 gnu: r-tesseract: Update to 5.2.5.
new ae5fb3234a gnu: Add r-ggamma.
new c2e086413e gnu: r-bslib: Update to 0.10.0.
new 7af33599b6 gnu: r-expint: Update to 0.2-1.
new 22dc2e2656 gnu: r-vroom: Update to 1.7.0.
new be3f4721d9 gnu: r-readr: Disable one test.
new 132eb8b569 gnu: r-data-table: Update to 1.18.2.1.
new 4a24daa667 gnu: r-orgmassspecr: Update to 0.5-4.
new 7770c92c6e gnu: r-plumber: Update to 1.3.3.
new f192c6fe2e gnu: r-mnormt: Update to 2.1.2.
new 26950d9e07 gnu: r-broom: Update to 1.0.12.
new 4965896763 gnu: r-renv: Update to 1.1.7.
new 88a0e032d6 gnu: r-summarytools: Update to 1.1.5.
new 83c321dd2d gnu: r-misc3d: Update to 0.9-2.
new 50c276b8b7 gnu: r-sparsevctrs: Update to 0.3.6.
new ca9131a956 gnu: r-flexdashboard: Update to 0.6.3.
new 4c045a890a gnu: r-semver: Update to 0.2.1.
new 24d7af4799 gnu: r-duckdb: Update to 1.4.4.
new 4f1331939f gnu: r-saige: Update to 1.5.1-1.7172b7f.
new 88a537a0b4 gnu: r-checkmate: Update to 2.3.4.
new 38755b5990 gnu: r-car: Update to 3.1-5.
new 6dd51a46bf gnu: r-numbat: Update to 1.5.2.
new d5cae29268 gnu: r-scistreer: Update to 1.2.1.
new adee6ce457 gnu: r-wgcna: Update to 1.74.
new bb9e4671f6 gnu: r-aer: Update to 1.2-16.
new d644020db2 gnu: r-base64enc: Update to 0.1-6.
new c218626a9c gnu: r-cardata: Update to 3.0-6.
new e01dc325bf gnu: r-cardx: Update to 0.3.2.
new 1c50db339c gnu: r-clubsandwich: Update to 0.6.2.
new b8caeb3869 gnu: r-collections: Update to 0.3.11.
new c506321437 gnu: r-dplyr: Update to 1.2.0.
new 05b0023ba6 gnu: r-gdtools: Update to 0.5.0.
new 8e51dac5ba gnu: r-ggiraph: Update to 0.9.4.
new 4db021aef3 gnu: r-ggplot2: Update to 4.0.2.
new 673636d8d6 gnu: r-ggstatsplot: Update to 0.13.5.
new 9ec17fd51a gnu: r-irlba: Update to 2.3.7.
new bc8c80b7c7 gnu: r-permute: Update to 0.9-10.
new 92ac6f1404 gnu: r-runner: Update to 0.4.6.
new 86e9ef61a9 gnu: r-rtk: Update to 0.2.7.
new 6c642eff9c gnu: r-cluster: Update to 2.1.8.2.
new 5d17561ab6 gnu: r-foreign: Update to 0.8-91.
new b73317e155 gnu: r-fpeek: Update to 0.2.0.
new e06b052e59 gnu: r-lattice: Update to 0.22-9.
new eebbc18b19 gnu: r-lubridate: Update to 1.9.5.
new 95d4d9a559 gnu: r-gap: Update to 1.9.
new c82ef93d0f gnu: r-secretbase: Update to 1.2.0.
new 90c14eca48 gnu: r-partykit: Update to 1.2-25.
new f4bbf7bd0c gnu: r-pkgload: Update to 1.5.0.
new df398634ae gnu: r-bindrcpp: Update to 0.2.4.
new e83a551d33 gnu: r-rmariadb: Update to 1.3.5.
new f291d52561 gnu: r-littler: Update to 0.3.22.
new 386d9dba1c gnu: r-timechange: Update to 0.4.0.
new 3a631b1fda gnu: r-timedate: Update to 4052.112.
new 25687d00ce gnu: r-rpostgres: Update to 1.4.9.
new 15c40bf093 gnu: r-psych: Update to 2.6.1.
new 01971397f1 gnu: r-statsexpressions: Update to 1.7.3.
new 0e7eb97a2d gnu: r-nanonext: Update to 1.8.0.
new 58e649d7bd gnu: r-ncdfcf: Update to 0.8.1.
new 7605e516ef gnu: r-network: Update to 1.20.0.
new c30345fe06 gnu: r-stabs: Update to 0.7-1.
new 0e5674d268 gnu: r-np: Update to 0.60-19.
new 1a66846dc9 gnu: r-randomizr: Update to 1.0.1.
new f4b0a082d2 gnu: r-sqldf: Update to 0.4-12.
new bb2031b1f9 gnu: r-operator-tools: Update to 1.6.3.1.
new 059647218d gnu: r-bibtex: Update to 0.5.2.
new a12e13bdec gnu: r-billboarder: Update to 0.5.1.
new 7415ae7edd gnu: r-rdpack: Update to 2.6.6.
new 3e9edde26c gnu: r-profilemodel: Update to 0.6.2.
new ae1a08c830 gnu: r-insight: Update to 1.4.6.
new 1894e83c90 gnu: r-reformulas: Update to 0.4.4.
new 7ed718a6ab gnu: r-performance: Update to 0.16.0.
new e00d68dc48 gnu: r-tweedie: Update to 3.0.12.
new 897044a54d gnu: r-rcppalgos: Update to 2.9.5.
new 5b2d49d3d5 gnu: r-rgl: Update to 1.3.34.
new ee681581b4 gnu: r-gargle: Update to 1.6.1.
new 407707a30b gnu: r-gmp: Update to 0.7-5.1.
new c194763106 gnu: r-globals: Update to 0.19.0.
new a18acf5142 gnu: r-dorng: Update to 1.8.6.3.
new 5f8eba6633 gnu: r-irace: Update to 4.4.0.
new 3b6a186a5b gnu: r-learnbayes: Update to 2.15.2.
new 8e7c599d23 gnu: r-yulab-utils: Update to 0.2.4.
new 942af03a14 gnu: r-varselrf: Update to 0.7-9.
new 4378e2eeee gnu: r-arrow: Update to 23.0.0.1.
new 5533ccdfe1 gnu: r-desolve: Update to 1.41.
new db083e46ac gnu: r-acuityview: Update to 1.1.1.
new 98465aeb67 gnu: r-spatstat-model: Update to 3.6-1.
new 0518dac05a gnu: r-spatstat-linnet: Update to 3.4-1.
new b68398bc42 gnu: r-spatstat: Update to 3.5-1.
new 3de0984e1e gnu: r-nanoarrow: Update to 0.7.0-3.
new c6799e0a80 gnu: r-rsample: Update to 1.3.2.
new 08bd3edcd6 gnu: r-lgr: Update to 0.5.2.
new b9c51fd747 gnu: r-mlr3cluster: Update to 0.2.0.
new e7d9794d51 gnu: r-highs: Update to 1.12.0-3.
new 157a3afd99 gnu: r-pdftools: Update to 3.7.0.
new 7be00e3a3d gnu: r-viridislite: Update to 0.4.3.
new e3ddcfe89a gnu: r-rsqlite: Update to 2.4.6.
new 62d21bc9db gnu: r-segmented: Update to 2.2-1.
new fc7f7301a9 gnu: r-robustbase: Update to 0.99-7.
new 446a5a0bc5 gnu: r-systempiperdata: Update to 2.14.4.
new ed5af8efe4 gnu: r-anvil: Update to 1.22.5.
new a6d16216e2 gnu: r-bambu: Update to 3.12.1.
new 972a988cb5 gnu: r-complexheatmap: Update to 2.26.1.
new a5b56cd6e4 gnu: r-enmix: Update to 1.46.1.
new 5ecec28dd7 gnu: r-msnid: Update to 1.44.1.
new f24609ef4c gnu: r-scannotatr: Update to 1.16.1.
new 8c886b250a gnu: r-seqarray: Update to 1.50.1.
new 5782124bb4 gnu: r-simona: Update to 1.8.1.
new 5200b1bed5 gnu: r-simplifyenrichment: Update to 2.4.1.
new 9fc268a8ea gnu: r-scds: Update to 1.26.1.
new 69ad88eb91 gnu: r-vsn: Update to 3.78.1.
new f1a3a0999a gnu: r-ggtreeextra: Update to 1.20.1.
new 1852f5e39d gnu: r-enrichedheatmap: Update to 1.40.1.
new 2b62bf4f2e gnu: r-gtrellis: Update to 1.42.1.
new c4b88e5e25 gnu: r-biocpkgtools: Update to 1.28.3.
new 94b82f7c44 gnu: r-pcatools: Update to 2.22.4.
new 458277137b gnu: r-rgreat: Update to 2.12.2.
new c8dc645fbd gnu: r-tximeta: Update to 1.28.3.
new c6d043f8f5 build-system/r: Use %BIOCONDUCTOR-VERSION.
The 163 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
gnu/local.mk | 4 +-
gnu/packages/bioconductor.scm | 99 ++-
gnu/packages/bioinformatics.scm | 8 +-
gnu/packages/cran.scm | 667 +++++++++++----------
gnu/packages/databases.scm | 6 +-
gnu/packages/duckdb.scm | 4 +-
gnu/packages/engineering.scm | 2 +-
gnu/packages/graphics.scm | 2 +-
gnu/packages/image-processing.scm | 33 +-
gnu/packages/javascript.scm | 176 +++++-
.../patches/mathjax-4.0.0-disable-webpack.patch | 15 +
gnu/packages/patches/mathjax-4.0.0-no-a11y.patch | 489 +++++++++++++++
gnu/packages/statistics.scm | 29 +-
guix/build-system/r.scm | 10 +-
14 files changed, 1117 insertions(+), 427 deletions(-)
create mode 100644 gnu/packages/patches/mathjax-4.0.0-disable-webpack.patch
create mode 100644 gnu/packages/patches/mathjax-4.0.0-no-a11y.patch
