mbakke pushed a commit to branch core-updates in repository guix. commit 839167ff9d74fc490b32f6a197591964f73b65e5 Merge: 27c1df0 030c912 Author: Marius Bakke <mba...@fastmail.com> Date: Sat Aug 25 16:44:07 2018 +0200
Merge branch 'staging' into core-updates Makefile.am | 10 +- doc/guix.fr.texi | 4270 +- doc/guix.texi | 74 +- gnu/build/linux-modules.scm | 10 +- gnu/local.mk | 21 +- gnu/packages/admin.scm | 162 +- gnu/packages/algebra.scm | 61 +- gnu/packages/astronomy.scm | 7 +- gnu/packages/audio.scm | 59 +- gnu/packages/authentication.scm | 77 + .../linux-libre/{4.17-arm.conf => 4.18-arm.conf} | 252 +- .../{4.17-arm64.conf => 4.18-arm64.conf} | 270 +- .../linux-libre/{4.17-i686.conf => 4.18-i686.conf} | 271 +- .../{4.17-x86_64.conf => 4.18-x86_64.conf} | 284 +- gnu/packages/backup.scm | 53 +- gnu/packages/bioconductor.scm | 37 + gnu/packages/bioinformatics.scm | 157 +- gnu/packages/bittorrent.scm | 58 +- gnu/packages/boost.scm | 16 + gnu/packages/bootloaders.scm | 8 +- gnu/packages/calendar.scm | 4 +- gnu/packages/cdrom.scm | 10 +- gnu/packages/ci.scm | 6 +- gnu/packages/code.scm | 8 +- gnu/packages/compression.scm | 26 +- gnu/packages/cpp.scm | 15 +- gnu/packages/cran.scm | 365 +- gnu/packages/crypto.scm | 14 +- gnu/packages/databases.scm | 170 +- gnu/packages/dictionaries.scm | 9 +- gnu/packages/disk.scm | 33 +- gnu/packages/django.scm | 4 +- gnu/packages/dns.scm | 43 +- gnu/packages/elixir.scm | 2 +- gnu/packages/emacs.scm | 30 +- gnu/packages/emulators.scm | 15 +- gnu/packages/engineering.scm | 16 +- gnu/packages/erlang.scm | 16 +- gnu/packages/fonts.scm | 9 +- gnu/packages/fontutils.scm | 27 +- gnu/packages/freedesktop.scm | 18 +- gnu/packages/game-development.scm | 4 +- gnu/packages/games.scm | 64 +- gnu/packages/gcc.scm | 1 + gnu/packages/gd.scm | 4 +- gnu/packages/gdb.scm | 4 +- gnu/packages/gettext.scm | 54 +- gnu/packages/gimp.scm | 23 +- gnu/packages/gl.scm | 2 +- gnu/packages/glib.scm | 10 +- gnu/packages/gnome.scm | 31 +- gnu/packages/gnupg.scm | 36 +- gnu/packages/gstreamer.scm | 10 +- gnu/packages/gtk.scm | 18 +- gnu/packages/guile.scm | 61 +- gnu/packages/haskell-check.scm | 89 +- gnu/packages/haskell-web.scm | 109 +- gnu/packages/haskell.scm | 472 +- gnu/packages/image.scm | 7 +- gnu/packages/imagemagick.scm | 10 +- gnu/packages/language.scm | 40 +- gnu/packages/libevent.scm | 9 +- gnu/packages/libusb.scm | 10 +- gnu/packages/license.scm | 19 +- gnu/packages/lighting.scm | 4 +- gnu/packages/linux.scm | 131 +- gnu/packages/mail.scm | 48 +- gnu/packages/markup.scm | 9 +- gnu/packages/marst.scm | 2 +- gnu/packages/maths.scm | 37 +- gnu/packages/mes.scm | 21 +- gnu/packages/messaging.scm | 4 +- gnu/packages/mp3.scm | 4 +- gnu/packages/mpd.scm | 16 +- gnu/packages/music.scm | 107 +- gnu/packages/ncurses.scm | 8 +- gnu/packages/networking.scm | 225 +- gnu/packages/ntp.scm | 4 +- gnu/packages/openldap.scm | 200 +- gnu/packages/parallel.scm | 4 +- gnu/packages/password-utils.scm | 131 +- .../patches/aegisub-icu59-include-unistr.patch | 12 + .../patches/btrfs-progs-e-value-block.patch | 37 - gnu/packages/patches/byobu-writable-status.patch | 10 +- gnu/packages/patches/clementine-fix-sqlite.patch | 23 + gnu/packages/patches/eigen-arm-neon-fixes.patch | 245 - .../patches/extundelete-e2fsprogs-1.44.patch | 23 + .../patches/gcc-4.8-libsanitizer-fix.patch | 15 + gnu/packages/patches/gdm-CVE-2018-14424.patch | 172 + gnu/packages/patches/lxc-CVE-2018-6556.patch | 116 - .../patches/openssl-1.1.0-CVE-2018-0495.patch | 152 - .../patches/openssl-1.1.0-CVE-2018-0732.patch | 50 - .../patches/perl-dbd-mysql-CVE-2017-10788.patch | 62 - gnu/packages/patches/qemu-CVE-2018-11806.patch | 105 - gnu/packages/patches/qtoctave-qt-5.11-fix.patch | 26 - gnu/packages/patches/racket-fix-xform-issue.patch | 63 - .../patches/racket-store-checksum-override.patch | 49 + .../patches/soundtouch-CVE-2018-1000223.patch | 143 + .../patches/soundtouch-CVE-2018-14044-14045.patch | 138 + .../patches/translate-shell-fix-curl-tests.patch | 60 - gnu/packages/pdf.scm | 8 +- gnu/packages/perl-check.scm | 107 +- gnu/packages/perl.scm | 779 +- gnu/packages/photo.scm | 2 +- gnu/packages/plotutils.scm | 16 +- gnu/packages/profiling.scm | 17 +- gnu/packages/protobuf.scm | 4 +- gnu/packages/python-crypto.scm | 4 +- gnu/packages/python-web.scm | 32 +- gnu/packages/python.scm | 90 +- gnu/packages/rdf.scm | 4 +- gnu/packages/samba.scm | 4 +- gnu/packages/scheme.scm | 44 +- gnu/packages/screen.scm | 12 +- gnu/packages/security-token.scm | 28 +- gnu/packages/shells.scm | 4 +- gnu/packages/skarnet.scm | 58 +- gnu/packages/spice.scm | 8 +- gnu/packages/ssh.scm | 13 +- gnu/packages/statistics.scm | 92 +- gnu/packages/syncthing.scm | 4 +- gnu/packages/tcl.scm | 2 +- gnu/packages/tex.scm | 125 +- gnu/packages/tls.scm | 24 +- gnu/packages/toys.scm | 15 +- gnu/packages/version-control.scm | 51 +- gnu/packages/video.scm | 26 +- gnu/packages/virtualization.scm | 10 +- gnu/packages/web-browsers.scm | 4 +- gnu/packages/web.scm | 320 +- gnu/packages/webkit.scm | 4 +- gnu/packages/wine.scm | 52 +- gnu/packages/wm.scm | 11 +- gnu/packages/xdisorg.scm | 16 +- gnu/packages/xfig.scm | 4 +- gnu/packages/xml.scm | 66 +- gnu/packages/xorg.scm | 26 +- gnu/services/cgit.scm | 13 +- gnu/services/cuirass.scm | 4 +- gnu/services/databases.scm | 9 +- gnu/services/messaging.scm | 9 +- gnu/services/security-token.scm | 93 + gnu/services/web.scm | 11 +- gnu/tests/security-token.scm | 71 + guix/build-system/asdf.scm | 2 +- guix/build/debug-link.scm | 210 + guix/build/graft.scm | 31 +- guix/build/svn.scm | 2 +- guix/grafts.scm | 17 +- guix/import/cpan.scm | 4 +- guix/import/github.scm | 92 +- guix/import/hackage.scm | 124 +- guix/import/json.scm | 14 +- guix/inferior.scm | 5 +- guix/scripts/import/hackage.scm | 37 +- po/doc/guix-manual.fr.po | 2077 +- po/guix/da.po | 774 +- po/guix/de.po | 2927 +- po/guix/fr.po | 42598 +++++++++++++++++-- tests/cpan.scm | 2 +- tests/debug-link.scm | 158 + tests/gremlin.scm | 4 +- 162 files changed, 51498 insertions(+), 10416 deletions(-) diff --cc gnu/local.mk index e98973b,60db25a..aac3a66 --- a/gnu/local.mk +++ b/gnu/local.mk @@@ -641,9 -646,9 +645,8 @@@ dist_patch_DATA = %D%/packages/patches/doc++-include-directives.patch \ %D%/packages/patches/doc++-segfault-fix.patch \ %D%/packages/patches/dovecot-trees-support-dovecot-2.3.patch \ - %D%/packages/patches/doxygen-gcc-ice.patch \ %D%/packages/patches/doxygen-test.patch \ %D%/packages/patches/dvd+rw-tools-add-include.patch \ - %D%/packages/patches/eigen-arm-neon-fixes.patch \ %D%/packages/patches/elfutils-tests-ptrace.patch \ %D%/packages/patches/elogind-glibc-2.27.patch \ %D%/packages/patches/einstein-build.patch \ @@@ -690,9 -695,9 +694,10 @@@ %D%/packages/patches/gcc-asan-missing-include.patch \ %D%/packages/patches/gcc-cross-environment-variables.patch \ %D%/packages/patches/gcc-fix-texi2pod.patch \ + %D%/packages/patches/gcc-4.8-libsanitizer-fix.patch \ %D%/packages/patches/gcc-4.9-libsanitizer-fix.patch \ %D%/packages/patches/gcc-libsanitizer-fix.patch \ + %D%/packages/patches/gcc-libsanitizer-ustat.patch \ %D%/packages/patches/gcc-libvtv-runpath.patch \ %D%/packages/patches/gcc-strmov-store-file-names.patch \ %D%/packages/patches/gcc-4-compile-with-gcc-5.patch \ @@@ -711,7 -716,7 +716,8 @@@ %D%/packages/patches/gd-CVE-2018-5711.patch \ %D%/packages/patches/gd-fix-tests-on-i686.patch \ %D%/packages/patches/gd-freetype-test-failure.patch \ + %D%/packages/patches/gdb-python-3.7.patch \ + %D%/packages/patches/gdm-CVE-2018-14424.patch \ %D%/packages/patches/gemma-intel-compat.patch \ %D%/packages/patches/geoclue-config.patch \ %D%/packages/patches/ghc-8.0-fall-back-to-madv_dontneed.patch \ @@@ -1011,8 -1013,10 +1014,7 @@@ %D%/packages/patches/patchelf-rework-for-arm.patch \ %D%/packages/patches/patchutils-xfail-gendiff-tests.patch \ %D%/packages/patches/patch-hurd-path-max.patch \ - %D%/packages/patches/perf-gcc-ice.patch \ - %D%/packages/patches/perl-archive-tar-CVE-2018-12015.patch \ - %D%/packages/patches/perl-file-path-CVE-2017-6512.patch \ %D%/packages/patches/perl-autosplit-default-time.patch \ - %D%/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch \ %D%/packages/patches/perl-deterministic-ordering.patch \ %D%/packages/patches/perl-finance-quote-unuse-mozilla-ca.patch \ %D%/packages/patches/perl-io-socket-ssl-openssl-1.0.2f-fix.patch \ diff --cc gnu/packages/fontutils.scm index f9e117b,30143eb..69e35cd --- a/gnu/packages/fontutils.scm +++ b/gnu/packages/fontutils.scm @@@ -6,8 -6,7 +6,8 @@@ ;;; Copyright © 2017 Rene Saavedra <ren...@openmailbox.org> ;;; Copyright © 2017 Leo Famulari <l...@famulari.name> ;;; Copyright © 2017 Nils Gillmann <n...@n0.is> - ;;; Copyright © 2017 Tobias Geerinckx-Rice <m...@tobias.gr> + ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <m...@tobias.gr> +;;; Copyright © 2018 Ricardo Wurmus <rek...@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; diff --cc gnu/packages/gdb.scm index 4c47cc5,f0c4c8b..d7b1946 --- a/gnu/packages/gdb.scm +++ b/gnu/packages/gdb.scm @@@ -42,10 -42,9 +42,10 @@@ (method url-fetch) (uri (string-append "mirror://gnu/gdb/gdb-" version ".tar.xz")) + (patches (search-patches "gdb-python-3.7.patch")) (sha256 (base32 - "0d2bpqk58fqlx21rbnk8mbcjlggzc9kb5sjirrfrrrjq70ka0qdg")))) + "0g6hv9xk12aa58w77fydaldqr9a6b0a6bnwsq87jfc6lkcbc7p4p")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; FIXME "make check" fails on single-processor systems. diff --cc gnu/packages/python.scm index 8c5e089,3c46102..244faa2 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@@ -2740,12 -2845,26 +2740,30 @@@ and is very extensible." (add-before 'check 'set-HOME ;; some tests require access to "$HOME/.cython" (lambda _ (setenv "HOME" "/tmp") #t)) + + ;; FIXME: These tests started failing on armhf after the 0.28 update + ;; (commit c69d11c5930), both with an error such as this: + ;; compiling (cpp) and running dictcomp ... + ;; === C/C++ compiler error output: === + ;; ‘ + ;; dictcomp.cpp:5221: confused by earlier errors, bailing out + ;; See <https://hydra.gnu.org/build/2948724> for logs. + ,@(if (target-arm32?) + `((add-before 'check 'disable-failing-tests + (lambda _ + (let ((disabled-tests (open-file "tests/bugs.txt" "a"))) + (for-each (lambda (test) + (format disabled-tests "~a\n" test)) + '("memslice" "dictcomp")) + (close-port disabled-tests))))) + '()) + (replace 'check - (lambda _ (invoke "python" "runtests.py" "-vv")))))) + (lambda _ + ;; The "with_outer_raising" test fails with Python 3.7. See + ;; https://github.com/cython/cython/issues/2454 + (delete-file "tests/run/generators_py.py") + (invoke "python" "runtests.py" "-vv")))))) (home-page "http://cython.org/") (synopsis "C extensions for Python") (description "Cython is an optimising static compiler for both the Python diff --cc gnu/packages/tex.scm index 98fc9f0,6ab999b..ed85950 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@@ -6,10 -6,10 +6,10 @@@ ;;; Copyright © 2016, 2018 Efraim Flashner <efr...@flashner.co.il> ;;; Copyright © 2016 Federico Beffa <be...@fbengineering.ch> ;;; Copyright © 2016 Thomas Danckaert <p...@thomasdanckaert.be> -;;; Copyright © 2016, 2017 Ricardo Wurmus <rek...@elephly.net> +;;; Copyright © 2016, 2017, 2018 Ricardo Wurmus <rek...@elephly.net> ;;; Copyright © 2017 Leo Famulari <l...@famulari.name> ;;; Copyright © 2017 Marius Bakke <mba...@fastmail.com> - ;;; Copyright © 2017 Tobias Geerinckx-Rice <m...@tobias.gr> + ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <m...@tobias.gr> ;;; Copyright © 2018 Danny Milosavljevic <danny...@scratchpost.org> ;;; Copyright © 2018 Arun Isaac <arunis...@systemreboot.net> ;;;