rekado pushed a commit to branch master
in repository guix.
commit c04f230eb3199b3b516584e102a87fc0e456806a
Author: Ricardo Wurmus <[email protected]>
Date: Mon Mar 25 16:19:52 2019 +0100
gnu: Add r-gosemsim.
* gnu/packages/bioconductor.scm (r-gosemsim): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a17372d..78af3f5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2644,3 +2644,30 @@ of the matrix are sorted according to a hierarchical
clustering, and the
corresponding dendrogram is plotted. Optionally, panels with additional
information about samples and features can be added to the plot.")
(license license:gpl2+)))
+
+(define-public r-gosemsim
+ (package
+ (name "r-gosemsim")
+ (version "2.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GOSemSim" version))
+ (sha256
+ (base32
+ "0ckihpy8jmgn2np1avprz76v9z7i5hqm2gj514c6dmmq3csbc7ib"))))
+ (properties `((upstream-name . "GOSemSim")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-go-db" ,r-go-db)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://guangchuangyu.github.io/software/GOSemSim";)
+ (synopsis "GO-terms semantic similarity measures")
+ (description
+ "The semantic comparisons of @dfn{Gene Ontology} (GO) annotations provide
+quantitative ways to compute similarities between genes and gene groups, and
+have became important basis for many bioinformatics analysis approaches.
+GOSemSim is an R package for semantic similarity computation among GO terms,
+sets of GO terms, gene products and gene clusters.")
+ (license license:artistic2.0)))
