rekado pushed a commit to branch master
in repository guix.
commit 692bce15953994e1c19c464a1d91f5222430a166
Author: Ricardo Wurmus <[email protected]>
Date: Fri Mar 29 17:43:40 2019 +0100
gnu: Add r-abadata.
* gnu/packages/bioconductor.scm (r-abadata): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4ee14a4..c0f0520 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -738,6 +738,43 @@ Disease Ontology.")
;;; Experiment data
+(define-public r-abadata
+ (package
+ (name "r-abadata")
+ (version "1.12.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/experiment/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/";
+ "release/data/experiment/src/contrib/"
+ "ABAData_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1bmj341xcymlrk02gss5vvrqc4ddas0rdw39lnpsj98hq6n11p5z"))))
+ (properties
+ `((upstream-name . "ABAData")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/ABAData/";)
+ (synopsis "Gene expression in human brain regions from Allen Brain Atlas")
+ (description
+ "This package provides the data for the gene expression enrichment
+analysis conducted in the package ABAEnrichment. The package includes three
+datasets which are derived from the Allen Brain Atlas:
+
+@enumerate
+@item Gene expression data from Human Brain (adults) averaged across donors,
+@item Gene expression data from the Developing Human Brain pooled into five
+ age categories and averaged across donors, and
+@item a developmental effect score based on the Developing Human Brain
+ expression data.
+@end enumerate
+
+All datasets are restricted to protein coding genes.")
+ (license license:gpl2+)))
+
(define-public r-hsmmsinglecell
(package
(name "r-hsmmsinglecell")
