Updated patch.
Regards,
Fede
From 6673a353080fd4b5136553624a7d777d243fc9a2 Mon Sep 17 00:00:00 2001
From: Federico Beffa <be...@fbengineering.ch>
Date: Wed, 29 Oct 2014 20:44:33 +0100
Subject: [PATCH] gnu: Add numpy.
* gnu/packages/python.scm (python-numpy, python2-numpy): New variables.
(python-wrapper): Add symlink to python lib directory.
---
gnu/packages/python.scm | 101 +++++++++++++++++++++++++++++++++++++++++++++++-
1 file changed, 99 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index c34bdc3..c317ed2 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -227,14 +227,18 @@ data types.")
(begin
(use-modules (guix build utils))
(let ((bin (string-append (assoc-ref %outputs "out") "/bin"))
- (python (string-append (assoc-ref %build-inputs "python") "/bin/")))
+ (python (string-append (assoc-ref %build-inputs "python") "/bin/"))
+ (lib (string-append (assoc-ref %outputs "out") "/lib"))
+ (python-lib (string-append
+ (assoc-ref %build-inputs "python") "/lib/")))
(mkdir-p bin)
(for-each
(lambda (old new)
(symlink (string-append python old)
(string-append bin "/" new)))
`("python3", "pydoc3", "idle3")
- `("python", "pydoc", "idle"))))))
+ `("python", "pydoc", "idle"))
+ (symlink python-lib lib)))))
(description (string-append (package-description python)
"\n\nThis wrapper package provides symbolic links to the python binaries
without version suffix."))))
@@ -1832,3 +1836,96 @@ sources.")
(define-public python2-sphinx
(package-with-python2 python-sphinx))
+
+(define python-numpy-reference
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/numpy/reference.pdf"))
+ (sha256
+ (base32
+ "0izsmzazhd042ra6p7as2jhwx8713sc5gpn9s5nifwm68biwn0lp"))))
+
+(define python-numpy-userguide
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/numpy/userguide.pdf"))
+ (sha256
+ (base32
+ "1z2xjlxldv01ad2775k9birg1hkqay5wbi5vmgz3rlr6dczvk77k"))))
+
+(define-public python-numpy
+ (package
+ (name "python-numpy")
+ (version "1.9.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "mirror://sourceforge/numpy"
+ "/numpy-" version ".tar.gz"))
+ (sha256
+ (base32
+ "1xbzsb84wg32zx5ilgvkdp0lwfqrycwhh5a2q9nx5iwyjpgcxrpp"))))
+ (build-system python-build-system)
+ (inputs
+ `(("python-numpy-userguide" ,python-numpy-userguide)
+ ("python-numpy-reference" ,python-numpy-reference)
+ ("atlas" ,atlas)))
+ (native-inputs
+ `(("python-nose" ,python-nose) ; used by tests
+ ("gfortran" ,gfortran-4.8)))
+ (outputs '("out" "doc")) ; doc is ca. 9MB
+ (arguments
+ `(#:phases
+ (alist-cons-before
+ 'build 'set-environment-variables
+ (lambda* (#:key outputs inputs
+ #:allow-other-keys #:rest args)
+ (let* ((atlas-threaded
+ (string-append (assoc-ref inputs "atlas")
+ "/lib/libtatlas.so"))
+ ;; On single core CPUs only the serial library is created.
+ (atlas-lib
+ (if (file-exists? atlas-threaded)
+ atlas-threaded
+ (string-append (assoc-ref inputs "atlas")
+ "/lib/libsatlas.so"))))
+ (setenv "ATLAS" atlas-lib)))
+ ;; TODO: generate documentation locally, including info files. The
+ ;; documentation can be built from the source. However, it needs
+ ;; matplotlib which we currently do not have.
+ (alist-cons-after
+ 'install 'install-doc
+ (lambda* (#:key outputs inputs #:allow-other-keys)
+ (let ((doc (string-append (assoc-ref outputs "doc")
+ "/share/doc/" ,name "-" ,version)))
+ (mkdir-p doc)
+ (copy-file (assoc-ref inputs "python-numpy-reference")
+ (string-append doc "/reference.pdf"))
+ (copy-file (assoc-ref inputs "python-numpy-userguide")
+ (string-append doc "/userguide.pdf"))))
+ ;; Tests can only be run after the library has been installed and not
+ ;; within the source directory.
+ (alist-cons-after
+ 'install 'check
+ (lambda _
+ (with-directory-excursion "/tmp"
+ (zero? (system* "python" "-c" "import numpy; numpy.test()"))))
+ (alist-delete
+ 'check
+ %standard-phases))))))
+ (home-page "http://www.numpy.org/";)
+ (synopsis "Fundamental package for scientific computing with Python")
+ (description "NumPy is the fundamental package for scientific computing
+with Python. It contains among other things: a powerful N-dimensional array
+object, sophisticated (broadcasting) functions, tools for integrating C/C++
+and Fortran code, useful linear algebra, Fourier transform, and random number
+capabilities.")
+ (license bsd-3)))
+
+(define python2-numpy-reference python-numpy-reference)
+
+(define python2-numpy-userguide python-numpy-userguide)
+
+(define-public python2-numpy
+ (package-with-python2 python-numpy))
+
--
1.8.4
