On Mon, May 23, 2016 at 04:57:16PM +0200, Ricardo Wurmus wrote: > * gnu/packages/bioinformatics.scm (r-genomationdata): New variable. > --- > gnu/packages/bioinformatics.scm | 26 ++++++++++++++++++++++++++ > 1 file changed, 26 insertions(+) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm > index fbaae12..51c371c 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -5002,6 +5002,32 @@ genomic feature data as long as it has minimal > information on the locations of > genomic intervals. In addition, it can use BAM or BigWig files as input.") > (license license:artistic2.0))) > > +(define-public r-genomationdata > + (package > + (name "r-genomationdata") > + (version "1.4.0") > + (source (origin > + (method url-fetch) > + ;; We cannot use bioconductor-uri here because this tarball is > + ;; located under "data/annotation/" instead of "bioc/". > + (uri (string-append "https://bioconductor.org/packages/" > + "release/data/experiment/src/contrib/" > + "genomationData_" version ".tar.gz")) > + (sha256 > + (base32 > + "1xzq2j722d8lcn5bc3aq3yb34xwis2d0bpsf6jsq4xw1bg0bsy79")))) > + (build-system r-build-system) > + (arguments `(#:substitutable? #f)) ^^^^ why not?
> + (native-inputs > + `(("r-knitr" ,r-knitr))) > + (home-page "http://bioinformatics.mdc-berlin.de/genomation/") > + (synopsis "Experimental data for use with the genomation package") > + (description > + "This package contains experimental genetic data for use with the > +genomation package. Included are Chip Seq, Methylation and Cage data, > +downloaded from Encode.") > + (license license:gpl3+))) > + > (define-public r-org-hs-eg-db > (package > (name "r-org-hs-eg-db") > -- > 2.7.3 > Looks good -- Efraim Flashner <efr...@flashner.co.il> אפרים פלשנר GPG key = A28B F40C 3E55 1372 662D 14F7 41AA E7DC CA3D 8351 Confidentiality cannot be guaranteed on emails sent or received unencrypted
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