Roel Janssen <r...@gnu.org> writes: > From 5cc17f0ceca12998a658dcd3cfd7494b137274e1 Mon Sep 17 00:00:00 2001 > From: Roel Janssen <r...@gnu.org> > Date: Tue, 26 Apr 2016 19:28:54 +0200 > Subject: [PATCH] gnu: Add tabixpp. > > * gnu/packages/bioinformatics.scm (tabixpp): New variable. > --- > gnu/packages/bioinformatics.scm | 34 ++++++++++++++++++++++++++++++++++ > 1 file changed, 34 insertions(+) > > diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm > index 620439f..450d250 100644 > --- a/gnu/packages/bioinformatics.scm > +++ b/gnu/packages/bioinformatics.scm > @@ -5102,3 +5102,37 @@ group or two ChIP groups run under different > conditions.") > (description "This program compares version strings. It intends to be > a > replacement for strverscmp.") > (license license:gpl3+)))) > + > +(define-public tabixpp > + (package > + (name "tabixpp") > + (version "1.0.0") > + (source (origin > + (method url-fetch) > + (uri (string-append "https://github.com/ekg/tabixpp/archive/v"; > + version ".tar.gz")) > + (file-name (string-append name "-" version ".tar.gz")) > + (sha256 > + (base32 "1s0lgks7qlvlhvcjhi2wm18nnza1bwcnic44ij7z8wfg88h4ivwn")))) > + (build-system gnu-build-system) > + (arguments > + `(#:tests? #f ; There are no tests to run. > + #:make-flags (let ((htslib-ref (assoc-ref %build-inputs "htslib"))) > + `("HTS_HEADERS=" ; Do not check for local htslib headers. > + ,(string-append "HTS_LIB=" htslib-ref "/lib/libhts.a") > + ,(string-append "LIBPATH=-L. -L" htslib-ref > "/include"))) > + #:phases > + (modify-phases %standard-phases > + (delete 'configure) ; There is no configure phase. > + (replace 'install > + (lambda* (#:key outputs #:allow-other-keys) > + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) > + (install-file "tabix" bin))))))) > + (inputs > + `(("htslib" ,htslib) > + ("zlib" ,zlib))) > + (home-page "https://github.com/ekg/tabixpp";) > + (synopsis "C++ wrapper around Tabix project") > + (description "This is a C++ wrapper around the Tabix project which > abstracts > +some of the details of opening and jumping in Tabix-indexed files.") > + (license license:expat)))
One more from the bottom of my inbox at work… (I haven’t even started looking at my private inbox.) Please add “#t” to the end of the “install” phase and adjust the indentation of the make-flags. The rest looks good. Thanks! -- Ricardo
