I am modelling my H2 database (23 tables at the moment) with MySQL Workbench. While that application generates MySQL-specific syntax, it is not very hard to replace that with something ANSI-like that H2 understands. Obviously, this does not work for roundtrip-style development, but it is sufficient for pure graphical modelling. MySQL Workbench is free, easy to use and has all the features I need.
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