Hello.

First of all you need to ensure that your tools and your web application 
really use the same version of H2 and a new database file is created, in 
some cases build systems may fetch an unexpected version. And it would be 
much safer not to use AUTO_SERVER anywhere.

If H2 is in classpath of your web application, you need to execute the 
SHUTDOWN from the lifecycle listener of you application during its unload, 
otherwise there is a risk that database will not be properly closed.

If some version of H2 doesn't work for you, try tome other. 1.4.200 is 
actually less reliable than 1.4.199. You can also compile H2 from the 
current sources if you need some new features and can't use 1.4.199 and 
older versions.

You can also use the standalone TCP server of H2 instead of embedded 
databases. Remote databases aren't affected that much by various problems 
of their clients.

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