Version 3.4.0 Hi again,
We've come across a problem that others may want to know about. The FSL setup scripts defines FSLDIR itself. FSL_DIR must be defined for freesurfer, to know what fsl version to use. The freesurfer setup script SetUpFreeSurfer.sh calls FreeSurferEnv.sh, which only sets FSL_DIR if it's not already set. So if freesurfer is setup in a user's .bash_profile (or similar), running SetUpFreeSurfer.sh from an HCP pipelines setup script will NOT change FSL_DIR if you're already pointing to a diff version of FSL than your .bash_profile. -M _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
