So I can either edit in wb_view or save a label file with the colors I want. Thanks!
On Mon, Nov 30, 2015 at 4:59 PM, Timothy Coalson <tsc...@mst.edu> wrote: > When displaying them in the GUI, select the "border" input mode, select > "edit" in the added toolbar, make sure "properties" is depressed, then > click on a border, then you get a popup where you can edit border colors. > Then, save the file from the GUI and it will have those colors. > > There is currently no command to set border colors, but the > -label-to-border command will use the label color as the output border > color. Unfortunately it looks like -border-merge may not currently > preserve colors (there can be conflicts between files that I'd need to > figure out what to do with). > > Tim > > > On Mon, Nov 30, 2015 at 4:30 PM, Yizhou Ma <maxxx...@umn.edu> wrote: > >> This worked for me. Thanks! >> >> And how can I change the display of the border? Like the color and width? >> I used -border-merge to merge all the borders and >> -border-export-color-table to get the color table. Is there a way I can >> save a border file with my own color table? >> >> Thanks, >> Cherry >> >> On Mon, Nov 30, 2015 at 4:01 PM, Timothy Coalson <tsc...@mst.edu> wrote: >> >>> The -label-to-border command requires gifti label files, as it does one >>> surface at a time - there is not a cifti version of this command (because >>> border files are surface only and single hemisphere, and there is no >>> equivalent volume operation). So, first -cifti-separate to get gifti label >>> files: >>> >>> wb_command -cifti-separate melodic_IC_ftb.dlabel.nii -label CORTEX_LEFT >>> test.L.label.gii -label CORTEX_RIGHT test.R.label.gii >>> >>> Then you can use -label-to-border: >>> >>> wb_command >>> -label-to-border Q1-Q6_R440.L.inflated.32k_fs_LR.surf.gii test.L.label.gii >>> test.L.border >>> wb_command >>> -label-to-border Q1-Q6_R440.R.inflated.32k_fs_LR.surf.gii test.R.label.gii >>> test.R.border >>> >>> Note that cifti files generally can only be used with operations that >>> begin with -cifti (there are some exceptions, like -nifti-information, >>> -file-information, -set-map-names, -add-to-spec-file, -file-convert, ...) >>> >>> Tim >>> >>> >>> On Mon, Nov 30, 2015 at 3:34 PM, Yizhou Ma <maxxx...@umn.edu> wrote: >>> >>>> Dear HCP experts, >>>> >>>> I am trying to create borders based on HCP's .dlabel files. I am >>>> working on the FTB labels in the ICA PTN results. The reference surface I >>>> use is the R440 template, inflated surface. Here's the command I used: >>>> >>>> wb_command -label-to-border Q1-Q6_R440.L.inflated.32k_fs_LR.surf.gii >>>> melodic_IC_ftb.dlabel.nii test.border >>>> >>>> I got the following error message: >>>> >>>> ERROR: Parse Error while reading melodic_IC_ftb.dlabel.nii: error >>>> occurred while parsing element line number: 1 column number: 1 >>>> >>>> Could somebody please help me with this? >>>> >>>> Thank you very much, >>>> Cherry >>>> >>>> _______________________________________________ >>>> HCP-Users mailing list >>>> HCP-Users@humanconnectome.org >>>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >>>> >>> >>> >> > _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
