Hi Jared, Sorry this took a while. With lots of clues from Tim Coalson, I think this 32k parcellation is the right thing:
Here are some files (login pub ; password download): Old 13b: http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/Tutorial/old_13b.png New 13b: http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/Tutorial/new_13b.png New-Old: http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/Tutorial/new-old.png Script: http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/Tutorial/fix_13b_OFP03.sh New dlabel.nii: http://brainmap.wustl.edu/pub/donna/WUSTL/HCP/Tutorial/parcellations_VGD11b_fix13b_lh.32k_fs_LR.dlabel.nii Jenn: Do you know how we can get this in subsequent releases? There is also the 164k... Donna On May 23, 2016, at 4:19 PM, "Zimmerman, Jared Perry" <jpzimmer...@partners.org> wrote: > Thanks Matt, that would be great. Please let us know when it's been fixed so > we can download the updated version. > > Best, > Jared > > -----Original Message----- > From: Glasser, Matthew [mailto:glass...@wustl.edu] > Sent: Monday, May 23, 2016 4:58 PM > To: Zimmerman, Jared Perry; 'Donna Dierker' > Cc: hcp-users@humanconnectome.org > Subject: Re: [HCP-Users] missing label in Composite Parcellation > FRB08_OFP03_retinotopic map > > Maybe we should just fix this internally and release corrected files as the > steps to do this appear a little complicated to me. > > Peace, > > Matt. > > On 5/23/16, 12:30 PM, "hcp-users-boun...@humanconnectome.org on behalf of > Zimmerman, Jared Perry" <hcp-users-boun...@humanconnectome.org on behalf of > jpzimmer...@partners.org> wrote: > >> Thanks Donna, >> >> I was able to repeat these steps, but also couldn't figure out how to >> make add the ROI to an existing label file. Anyone have any advice on >> how to do this? >> >> >> Thanks, >> Jared >> >> -----Original Message----- >> From: Donna Dierker [mailto:do...@brainvis.wustl.edu] >> Sent: Saturday, May 21, 2016 9:05 AM >> To: Zimmerman, Jared Perry >> Cc: hcp-users@humanconnectome.org >> Subject: Re: [HCP-Users] missing label in Composite Parcellation >> FRB08_OFP03_retinotopic map >> >> I didn't solve this yesterday, but I confirmed that both the 164k and >> 32k versions of the parcellations_VGD11b.32k_fs_LR.dlabel.nii in >> Connectome Workbench v1.0 Tutorial dataset have unassigned vertices in >> the parcel encircled by the OFP03 13b border in the left hem. The >> right hem counterpart is nice and yellow where the left is gray. This >> parcel is near the olfactory sulcus, so you need a ventral view of the >> surface to see it. >> >> I was able to use wb_command -border-to-rois to output a func.gii that >> filled in the border, but unable to figure out how to inject this ROI >> into the existing dlabel.nii with the correct label name. >> >> No joy yet, but progress? >> >> >> On May 19, 2016, at 12:20 PM, "Zimmerman, Jared Perry" >> <jpzimmer...@partners.org> wrote: >> >>> Hi HCP users, >>> >>> I noticed that one of the labels in the FRB08_OFP03_retinotopic label >>> map in the parcellations_VGD11b.32k_fs_LR.dlabel.nii file that comes >>> with the tutorial data is missing. It looks like the 13b label on the >>> left hemisphere isn't in the label file. It seems like it is in the >>> border file, but not in the label file. Would it be possible to get a >>> copy of the label file with this label added, or to add it manually? >>> >>> >>> Thanks, >>> Jared >>> The information in this e-mail is intended only for the person to >>> whom it is addressed. If you believe this e-mail was sent to you in >>> error and the e-mail contains patient information, please contact the >>> Partners Compliance HelpLine at http://www.partners.org/complianceline >>> . If the e-mail was sent to you in error but does not contain patient >>> information, please contact the sender and properly dispose of the >>> e-mail. >>> _______________________________________________ >>> HCP-Users mailing list >>> HCP-Users@humanconnectome.org >>> http://lists.humanconnectome.org/mailman/listinfo/hcp-users >> >> >> _______________________________________________ >> HCP-Users mailing list >> HCP-Users@humanconnectome.org >> http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ________________________________ > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you are > not the intended recipient, be advised that any unauthorized use, disclosure, > copying or the taking of any action in reliance on the contents of this > information is strictly prohibited. If you have received this email in error, > please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
