Dear madam,
The healthy controls and Subjects are scanned on same scanner , I am not using HCP data . Thanks Vasudev On 11 July 2016 at 17:40, Dierker, Donna <do...@wustl.edu> wrote: > I don't know of any software that does a better job at that task. > > You do need to run your subject through the Freesurfer pipeline, which > does a lot of stuff. It segments into gray matter, white matter, CSF, > etc. And yes -- it generates a map of cortical thickness (distance between > gm/wm and pial). > > Spend some time digesting the Freesurfer wiki. If you want to do what you > want to do, Freesurfer can help. > > But I still agree with Mike: If your controls and proband subjects were > scanned on different scanners, you may have a difficult review process > ahead of you when it comes time to publish your results. Something to > consider sooner rather than later. > > > On Jul 11, 2016, at 10:36 AM, Dev vasu < > vasudevamurthy.devulapa...@gmail.com> wrote: > > > Dear madam, > > > > Is there any way to measure the distance from Pial surface boundary with > GM/WM boundary in freesurfer ?. > > > > > > Thanks > > Vasudev > > > > On 11 July 2016 at 17:25, Dierker, Donna <do...@wustl.edu> wrote: > > Hi Vasudev, > > > > This question confuses me a bit, I confess, but I would use Freesurfer > to generate cortical thickness measurements from T1w volumes: > > > > https://surfer.nmr.mgh.harvard.edu/fswiki > > > > Donna > > > > > > On Jul 11, 2016, at 5:20 AM, Dev vasu < > vasudevamurthy.devulapa...@gmail.com> wrote: > > > > > Dear Sir, > > > > > > > > > can we used myelin style as a mapping method for Volume to surface > mapping in wb_command to produce cortical thickness files,Unfortunately i > only have T1w images and we have not acquired T2w images, i would like to > use T1w images to generate Cortical thickness , could you please let me > know if its appropriate way generate them using > > > wb_command -volume-to-surface-mapping command and Myelin style mapping > method ?. > > > > > > > > > > > > Thanks > > > Vasudev > > > > > > > > > > > > On 8 July 2016 at 17:03, Harms, Michael <mha...@wustl.edu> wrote: > > > > > > Hi, > > > For statistical inference, I would recommend that you look into the > PALM tool. > > > > > > http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM > > > > > > > > > -- > > > Michael Harms, Ph.D. > > > ----------------------------------------------------------- > > > Conte Center for the Neuroscience of Mental Disorders > > > Washington University School of Medicine > > > Department of Psychiatry, Box 8134 > > > 660 South Euclid Ave. Tel: 314-747-6173 > > > St. Louis, MO 63110 Email: mha...@wustl.edu > > > > > > From: Dev vasu <vasudevamurthy.devulapa...@gmail.com> > > > Date: Friday, July 8, 2016 at 9:56 AM > > > To: "Harms, Michael" <mha...@wustl.edu> > > > Cc: "<hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org> > > > Subject: Re: [HCP-Users] create cortical thickness maps for multiple > subjects in the same template space > > > > > > Dear Sir, > > > > > > Is there any way to quantify the changes in cortical thickness between > healthy controls and non healthy controls ?. > > > > > > > > > Thanks > > > Vasudev > > > > > > On 8 July 2016 at 16:47, Harms, Michael <mha...@wustl.edu> wrote: > > > > > > HI, > > > Cortical thickness maps on the surface mesh are already created for > you. You should analyze/view the thickness on the surface; not try to > project the thickness back onto the volume. > > > > > > cheers, > > > -MH > > > > > > -- > > > Michael Harms, Ph.D. > > > ----------------------------------------------------------- > > > Conte Center for the Neuroscience of Mental Disorders > > > Washington University School of Medicine > > > Department of Psychiatry, Box 8134 > > > 660 South Euclid Ave. Tel: 314-747-6173 > > > St. Louis, MO 63110 Email: mha...@wustl.edu > > > > > > From: <hcp-users-boun...@humanconnectome.org> on behalf of Dev vasu < > vasudevamurthy.devulapa...@gmail.com> > > > Date: Friday, July 8, 2016 at 9:35 AM > > > To: "<hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org> > > > Subject: [HCP-Users] create cortical thickness maps for multiple > subjects in the same template space > > > > > > Dear Sir /madam, > > > > > > I am able to successfully run Structural preprocessing pipeline on a > group of 24 subjects, I would like to know how i can create cortical > thickness maps for all the subjects in MNI152_T1_0.7mm.nii.gz template. > > > > > > > > > > > > Thanks > > > Vasudev > > > > > > > > > _______________________________________________ > > > HCP-Users mailing list > > > HCP-Users@humanconnectome.org > > > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > > > > > > > > > > > > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. 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