Okay I will make that documentation more explicit. Please use ciftiopen/save/savereset.
Thanks, Matt. From: "HINDRIKS, RIKKERT" <[email protected]<mailto:[email protected]>> Date: Wednesday, August 17, 2016 at 12:06 PM To: Matt Glasser <[email protected]<mailto:[email protected]>> Cc: "Harms, Michael" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] read dtseries CIFTI into Matlab Hi Matthew, It is answer A of FAQ 2 on the HCP website. Even though it says that this is for MEG users, it documentation says that it can load general CIFTI files. So than you can expect it to preserve the vertex ordering of rfmri data right? Kind regards, Rikkert On Wed, Aug 17, 2016 at 6:55 PM, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: Out of curiosity, where are you reading that it is a good idea to use ft_read_cifti? That tool is compatible with field trip and MEG, but not, unfortunately, the HCP MRI data. Thanks, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of "Harms, Michael" <[email protected]<mailto:[email protected]>> Date: Wednesday, August 17, 2016 at 8:53 AM To: "HINDRIKS, RIKKERT" <[email protected]<mailto:[email protected]>>, "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] read dtseries CIFTI into Matlab Hi, ciftiopen.m is not intended to provide the medial wall vertices. Robert Oostenveld is to my knowledge the sole maintainer of the ft_read_cifti stuff, and I'm not sure whether it is still under active development. cheers, -MH -- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173<tel:314-747-6173> St. Louis, MO 63110 Email: [email protected]<mailto:[email protected]> From: <[email protected]<mailto:[email protected]>> on behalf of "HINDRIKS, RIKKERT" <[email protected]<mailto:[email protected]>> Date: Wednesday, August 17, 2016 at 8:41 AM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] read dtseries CIFTI into Matlab Dear HCP users, I have read the dtseries data from the Workbench Tutorial into Matlab using ft_read_cifti. Although the medial wall indices are in the right place, there appears to be something wrong with the ordering of the cortical vertices (see attached figure, which shows the first slice and should be the same as Figure 11 in the Workbench Tutorial). Alternatively, when I use the cifti_open command from wb_command, everything looks alright (see attached figure) but I had to manually insert the medial wall indices that I obtained from using fr_read_cifti. It would be very helpful if either someone could clarify why there seems to be something wrong with fr_read_cifti and/or include the medial wall indices in the output of cifti_open (for quick and easy visualization in Matlab). Kind regards, Rikkert Hindriks P.S. With all other file types in the tutorial dataset, ft_read_cifti seems to work alright. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
