Did you try using the -transposedata option?
> On Sep 8, 2016, at 4:54 PM, Michael F.W. Dreyfuss <mid2...@med.cornell.edu> > wrote: > > Hello, > > I am trying to run PALM on subject level betas in cifti to get group means > and identify clusters of significant activation. I have tried two things so > far, and both have resulted in errors. > > The first attempt was the following: > > palm $COPE_INPUTS -d $LevelThreeFEATDir/design.mat -t > $LevelThreeFEATDir/design.con -fdr -T -ise > > $COPE_INPUTS is a list of 41 cope files in the format "-i > SC01736/TGNGcope1.feat/cope1.dtseries.nii -i > SC01879/TGNGcope1.feat/cope1.dtseries.nii ..." > > The .mat file contains 41 under NumPoints and has equal weighting for all 41 > inputs. > > The resulting error is: > Error using palm_takeargs (line 1989) > The number of rows in the design matrix does > not match the number of observations in the data. > - Rows in the matrix: 41 > - Observations in the data: 91282 > > Because this seems to be looking at each grayordinate as an observation, I > tried adding the option -evperdat > > But then I get the error: > Index exceeds matrix dimensions. > > I am not sure why I am getting this error because I have 41 inputs and a 41 > inputs specified in the .mat file. > > Do you have any advice for how I can get this to run to get clusters of mean > activation for a given subject level beta? > > Also, what recommendations do you have for identifying clusters beyond -T? > > Thank you, > Michael > _______________________________________________ > HCP-Users mailing list > HCP-Users@humanconnectome.org > http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
