Aren’t those the sort of values that you’d expect when looking at p-values?
-- Michael Harms, Ph.D. ----------------------------------------------------------- Conte Center for the Neuroscience of Mental Disorders Washington University School of Medicine Department of Psychiatry, Box 8134 660 South Euclid Ave. Tel: 314-747-6173 St. Louis, MO 63110 Email: mha...@wustl.edu From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Timothy Hendrickson <hendr...@umn.edu<mailto:hendr...@umn.edu>> Date: Wednesday, December 7, 2016 at 2:54 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org>> Subject: [HCP-Users] Myelin Group Analysis with PALM HCP users/experts, I am working on performing a group difference analysis with the per vertex myelin maps. I believe that I have followed the how-to document on the PALM wiki correctly in order to separate the dscalar.nii myelin map into L and R .func.gii files, and to to perform TFCE permutation analysis. Once my PALM analysis completes I have files that are corrected at a family wise error rate (FWER) of p <0.05, which is what I expect. Anyway what I am now encountering is an issue with visualization. What I am getting are large clusters with a variety of colors and values at each vertex. The per vertex values in each FWER corrected file do not make sense to me. Prior to the PALM permutation analysis my value ranges group averaged myelin maps are as follows: right hemisphere - ~1.7-3.1; left hemisphere - ~1.5-2.6 Where as following PALM my values ranges are: right hemisphere - ~0.00 -0.52; left hemisphere - ~0.00-0.70. I've attached a screen shot of the visualization. -Tim Timothy Hendrickson Department of Psychiatry University of Minnesota Office: 612-624-6441 Mobile: 507-259-3434 (texts okay) _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users ________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail. _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
