Understood, Thanks a lot for the info! On Mon, Dec 12, 2016 at 2:58 PM Glasser, Matthew <[email protected]> wrote:
> You can do it either way depending on the options you choose in > probtrackx. We haven’t decided what the official way will be for the HCP > yet. > > Peace, > > Matt. > > From: David Moreno <[email protected]> > Date: Monday, December 12, 2016 at 7:56 AM > To: Matt Glasser <[email protected]>, "[email protected]" < > [email protected]> > Subject: Re: [HCP-Users] About tractography code/software and seeding > scheme > > Hi Matt, thanks for the reply. > And could you tell me a bit more about the way the connectivity matrices > are computed? > As in: is seeding done from whole white matter with a total number of > streamlines (and afterwards filtered by pairwise regions to calculate the > matrix)? > Or is seeding started from each different atlas-based region? and if so > how many streamlines per region. > > Thanks in advance, > > On Mon, Dec 12, 2016 at 2:50 PM Glasser, Matthew <[email protected]> > wrote: > > I don’t think we have officially released and scripts for this, but you > can use FSL’s probtrackx2 for this purpose. > > Peace, > > Matt. > > From: <[email protected]> on behalf of David Moreno < > [email protected]> > Date: Monday, December 12, 2016 at 6:42 AM > To: "[email protected]" <[email protected]> > Subject: [HCP-Users] About tractography code/software and seeding scheme > > Hello HCP users, > > I would like to find out more about the code/software HCP pipeline uses > for probabilistic tracking, and especially about its scheme to compute a > connectivity matrix ie: what is used as seeding mask (all wm or gm/wm > interface ROIs). > I am trying to find these bits in the code provided at > https://github.com/Washington-University/Pipelines but I am having a hard > time locating it. > Could anybody give me some pointers? > > Regards, > -- > > [image: Mint Labs] > <http://t.sidekickopen54.com/e1t/c/5/f18dQhb0S7lC8dDMPbW2n0x6l2B9nMJW7t5XZs8qC6LHN3LyXBCdns9WVcVPpW56dTPhf3YpCFx02?t=https%3A%2F%2Fhtmlsig.com%2Ft%2F0000001BS30VN&si=5760864780288000&pi=e8e5ae17-0cc6-402c-dc68-80cfbe761fcd> > > David Moreno-Dominguez, PhD / Head of Neuroimaging > +34 659 713 969 > > Mint Labs > +34 933 282 007 > http://www.mint-labs.com > > [image: Twitter] <https://twitter.com/dmordom> [image: LinkedIn] > <https://www.linkedin.com/in/dmordom> > > _______________________________________________ > HCP-Users mailing list > [email protected] > http://lists.humanconnectome.org/mailman/listinfo/hcp-users > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > > -- > > [image: Mint Labs] > <http://t.sidekickopen54.com/e1t/c/5/f18dQhb0S7lC8dDMPbW2n0x6l2B9nMJW7t5XZs8qC6LHN3LyXBCdns9WVcVPpW56dTPhf3YpCFx02?t=https%3A%2F%2Fhtmlsig.com%2Ft%2F0000001BS30VN&si=5760864780288000&pi=e8e5ae17-0cc6-402c-dc68-80cfbe761fcd> > > David Moreno-Dominguez, PhD / Head of Neuroimaging > +34 659 713 969 > > Mint Labs > +34 933 282 007 > http://www.mint-labs.com > > [image: Twitter] <https://twitter.com/dmordom> [image: LinkedIn] > <https://www.linkedin.com/in/dmordom> > > > ------------------------------ > > The materials in this message are private and may contain Protected > Healthcare Information or other information of a sensitive nature. If you > are not the intended recipient, be advised that any unauthorized use, > disclosure, copying or the taking of any action in reliance on the contents > of this information is strictly prohibited. If you have received this email > in error, please immediately notify the sender via telephone or return mail. > -- [image: Mint Labs] <http://t.sidekickopen54.com/e1t/c/5/f18dQhb0S7lC8dDMPbW2n0x6l2B9nMJW7t5XZs8qC6LHN3LyXBCdns9WVcVPpW56dTPhf3YpCFx02?t=https%3A%2F%2Fhtmlsig.com%2Ft%2F0000001BS30VN&si=5760864780288000&pi=e8e5ae17-0cc6-402c-dc68-80cfbe761fcd> David Moreno-Dominguez, PhD / Head of Neuroimaging +34 659 713 969 Mint Labs +34 933 282 007 http://www.mint-labs.com [image: Twitter] <https://twitter.com/dmordom> [image: LinkedIn] <https://www.linkedin.com/in/dmordom> _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
