Hello, Thank you for the assistance, The BedpostX Data for all the 1200 subjects seemed to be quite huge for me to download and handle. I am planning to download and process BedpostX data in small batches of subjects. Therefore it'd be great if you could provide me with a complete list of the subject id's of the entire 1200 subject release as with that I can create subject groups to download. Thanking You Regards Govinda
----- Original Message ----- From: "Elam, Jennifer" <[email protected]> To: "hcp-users" <[email protected]>, "Govinda Surampudi" <[email protected]> Sent: Friday, March 3, 2017 11:02:07 PM Subject: Re: 3T diffusion MRI data and FSL’s BEDPOSTX Hi Govinda, If you want the BedpostX Diffusion Analysis data for all subjects: Once you are logged into ConnectomeDB, click on the "Download Image Data" pulldown at the right and choose Subjects with 3T MR Session Data: [cid:ead6f1d1-2d00-4aa4-97b9-7d9e696da287] Then, on the Download packages page, on the left, Choose Processing level: Analysis: [cid:a832e42a-9d54-437e-884a-12c9f1b288ea] Then, choose Modalities: Diffusion BedpostX [cid:b6dd8355-0400-4435-9020-287d089fde7f] Click on the "+queue for download" button to prepare to download all the available 3T BedpostX packages (1065 subjects, ~1450 GB of data). If you only want this data for one or a subset of subjects: On the Public Connectome Data splash page on login, click on the "Explore Subjects" pulldown to select a group and then browse or filter on the ConnectomeDB Dashboard (this is described in the "How to explore HCP data in ConnectomeDB" section in Chapter 1 of the S1200 Reference Manual<http://humanconnectome.org/documentation/S1200/HCP_S1200_Release_Reference_Manual.pdf>) to get the subject group you want. Then, click on the Download Images button on the right: [cid:28b51684-af60-43d3-89b5-74ca44e1cee8] Follow the last two steps above on the Download packages page to queue the Diffusion BedpostX packages. More information about downloading is in the "How to Download HCP Data" section in Chapter 1 of the S1200 Reference Manual<http://humanconnectome.org/documentation/S1200/HCP_S1200_Release_Reference_Manual.pdf>. Let me know if you have any questions and enjoy the data! Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> [email protected]<mailto:[email protected]> www.humanconnectome.org<http://www.humanconnectome.org/> ________________________________ From: [email protected] <[email protected]> on behalf of Govinda Surampudi <[email protected]> Sent: Thursday, March 2, 2017 11:31:19 PM To: hcp-users Subject: [HCP-Users] 3T diffusion MRI data and FSL’s BEDPOSTX Hello all, Glad to see the 1200 data release. According to the mail, 3T MRI data is processed using FSL’s BEDPOSTX. When I login and go into the website of 'Dataset: WU-Minn HCP Data - 1200 Subjects' data I am unable to find output files of BEDPOSTX. Kindly guide me to find the data. Regards, Govinda _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
