The appropriate image to use is:
${StudyFolder}/${Subject}/T1w/T1w_acpc_dc_restore_1.25.nii.gz.
Peace,
Matt.
On 3/19/17, 10:53 AM, "hcp-users-boun...@humanconnectome.org on behalf of
Govinda Surampudi" <hcp-users-boun...@humanconnectome.org on behalf of
govinda.suramp...@research.iiit.ac.in> wrote:
>Hi all,
>I am running tractography on single subject bedpostX preprocessed data to
>generate structural connectivity matrices of the brain.
>I refered to https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FDT/UserGuide for
>running the command.
>It says "When using surfaces, the user must set the surface coordinate
>convention and provide a surface reference volume." and " Use the browse
>button to locate a reference image (e.g., subject1.bedpostX/struct.nii.gz
>if seed space is structral space).".
>However, I am not able to find a surface reference image in the single
>subject bedpostX preprocessed data downloaded from connctomeDB.
>Could you explain briefly what a surface reference file is and where
>would I find one ?
>Thanks a lot !
>Regards,
>Govinda
>
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