Dear experts,
I have run the HCP pipeline w/o errors. However, for a few patients the functional connectivity maps are empty, i.e. the correlation fitting routine does not converge for any region of the brain. The command I use is: wb_command -cifti-average-roi-correlation ${basedir}/${idfolder}/${idfolder}_FCmap_from_seed.dscalar.nii -cifti-roi seed.dscalar.nii –cifti ${basedir}/${idfolder} RS_fMRI_1_Atlas_x4_mov_regr_b_lt_resid_brain_regr_resid_frcintrp_bpss_lc800_hc2.dtseries.nii There are NaNs in the data sometimes. And in the dense timeseries data, there are grayordinates with a constant timeseries. How can I solve this problem? Thank you very much in advance. Best wishes, Leah Moran _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users