Dear experts,
I have run the HCP pipeline w/o errors. However, for a few patients the
functional connectivity maps are empty, i.e. the correlation fitting routine
does not converge for any region of the brain.
The command I use is: wb_command -cifti-average-roi-correlation
${basedir}/${idfolder}/${idfolder}_FCmap_from_seed.dscalar.nii -cifti-roi
seed.dscalar.nii –cifti ${basedir}/${idfolder}
RS_fMRI_1_Atlas_x4_mov_regr_b_lt_resid_brain_regr_resid_frcintrp_bpss_lc800_hc2.dtseries.nii
There are NaNs in the data sometimes. And in the dense timeseries data, there
are grayordinates with a constant timeseries. How can I solve this problem?
Thank you very much in advance.
Best wishes,
Leah Moran
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