I think you want wb_command -volume-label-import. Peace,
Matt. From: <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Seán Froudist Walsh <froud...@tcd.ie<mailto:froud...@tcd.ie>> Date: Tuesday, June 20, 2017 at 7:04 PM To: "hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>" <hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>> Subject: [HCP-Users] Custom visualisation help Hey all, I'm trying to get a colour display on a surface to match a colormap I have set up in matlab, and have run into a whole world of pain. I would greatly appreciate your help. I have created a label text file of the following format: TCpol_R 1 255 208 208 1 TCs_R 2 255 158 158 1 Amyg_R 3 255 81 81 1 PFCoi_R 4 255 231 231 1 I additionally have a nifti file, and a func.gii surface file (created with wb_command -volume-to-surface-mapping ) Ideally I would like to display those colours on the surface, in the correct clusters. I thought I would try to display them on a volume as a first step, but that hasn't gone smoothly either. I used a command of the following format: wb_command -cifti-label-import my_atlas.nii.gz my_label_table.txt my_label_volume.nii.gz Then I tried to display the label file over the volume in wb_view to no avail (I only see the underlying anatomical volume). Despite this, if I go to Overlay Tools --> Settings --> Edit Map's Labels I can see all of the labels I wanted listed, next to the correct colours. I would greatly appreciate if you could help fill in the gaps in my knowledge so that I can display my custom coloured labels on the surface. Many thanks, Sean _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
