This also needs to be set to NONE:
AvgrdcSTRING=“SiemensFieldMap" Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Sara Rafique <[email protected]<mailto:[email protected]>> Date: Wednesday, July 12, 2017 at 4:13 PM To: Matt Glasser <[email protected]<mailto:[email protected]>> Cc: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: Re: [HCP-Users] PreFreeSurfer: Cannot open volume None for reading! Hi Matt, Please see attached. I also attached the log that is generated, in case this helps. Many thanks, Sara On 10 July 2017 at 22:12, Glasser, Matthew <[email protected]<mailto:[email protected]>> wrote: Can you post the code you are using the launch the pipeline? Thanks, Matt. From: <[email protected]<mailto:[email protected]>> on behalf of Sara Rafique <[email protected]<mailto:[email protected]>> Date: Sunday, July 9, 2017 at 7:44 PM To: "[email protected]<mailto:[email protected]>" <[email protected]<mailto:[email protected]>> Subject: [HCP-Users] PreFreeSurfer: Cannot open volume None for reading! Hi HCP team, I'm attempting to run the PreFreeSurfer.sh script, but I get the following error: About to use fsl_sub to queue or run /Applications/HCP_Pipelines/PreFreeSurfer/PreFreeSurferPipeline.sh Cannot open volume None for reading! Is this error related to the variables I have set to "NONE" as indicated by the script? These being: MagnitudeInputName PhaseInputName SpinEchoPhaseEncodeNegative SpinEchoPhaseEncodePositive DwellTime SEUnwarpDir TopupConfig GEB0InputName T1wSampleSpacing T2wSampleSpacing UnwarpDir GradientDistortionCoeffs Many thanks, Sara _______________________________________________ HCP-Users mailing list [email protected]<mailto:[email protected]> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list [email protected] http://lists.humanconnectome.org/mailman/listinfo/hcp-users
