That is a new option that is not yet in a released version of workbench,
and was probably not intended to be pushed to the pipelines repository.
You can use github to find the version before that line was added, and use
that instead.  Alternatively, you can probably just comment out that line
and any that reference the generated file, it is probably for visualization
purposes only.  Finally, you could use a development version of workbench
which does have that option.  The dev_latest versions here probably have it:

http://brainvis.wustl.edu/workbench/

However, please do not make any scene files with any dev_latest version of
wb_view, because when we change things in the GUI during development, the
scene files may become incompatible.

Tim


On Wed, Oct 4, 2017 at 12:25 PM, Theis, Nicholas <the...@upmc.edu> wrote:

> Dear HCP experts,
>
> I am trying to run the HCP Pipeline scripts on the tutorial data (100307).
> When I run the script PostFreeSurferPipelineBatch.sh, I get following
> error after the wb_command:
>
>
> While running:
> /opt/ni_tools/workbench/bin_rh_linux64/../exe_rh_linux64/wb_command
> -surface-distortion /data/MRI/HCP/tutorial/100307/
> MNINonLinear/Native/100307.L.sphere.native.surf.gii
> /data/MRI/HCP/tutorial/100307/MNINonLinear/Native/100307.L.
> sphere.reg.reg_LR.native.surf.gii /data/MRI/HCP/tutorial/100307/
> MNINonLinear/Native/100307.L.Strain_FS.native.shape.gii
> -local-affine-method
>
> ERROR: Unexpected parameter: -local-affine-method
>
>
> I've tried troubleshooting and I know that this parameter is being called
> from: FreeSurfer2CaretConvertAndRegisterNonlinear.sh, but I am not sure
> of what I should do next. Do you have any suggestions?
>
> Thank you,
> -Nick
>
>
> _______________________________________________
> HCP-Users mailing list
> HCP-Users@humanconnectome.org
> http://lists.humanconnectome.org/mailman/listinfo/hcp-users
>

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