oh wait - I have and extra 'archive' in the path... is this what the
problem is?
On 11/02/2017 06:00 PM, Nicola Toschi wrote:
Hi Michael,
I am using:
sub=100206
h=R
curl -u USER:PASS -O
https://db.humanconnectome.org/data/archive/projects/HCP_1200/subjects/${sub}/experiments/${sub}_CREST/resources/${sub}_CREST/files//MNINonLinear/Native/${sub}.${h}.sphere.MSMAll.native.surf.gii
so the URL is the same (i think) but the curl options are slightly
different... could this be it? I will try!
Thanks for your reply,
Nicola
On 11/02/2017 05:50 PM, Hodge, Michael wrote:
Hi Nicola,
What URL are you using to retrieve the file via CREST/curl? When I do:
curl -s -k --cookie JSESSIONID=$JSESSIONID
https://db.humanconnectome.org/data/projects/HCP_1200/subjects/100206/experiments/100206_CREST/resources/100206_CREST/files/MNINonLinear/Native/100206.R.sphere.MSMAll.native.surf.gii
-o 100206.R.sphere.MSMAll.native.surf.gii
<https://db.humanconnectome.org/data/projects/HCP_1200/subjects/100206/experiments/100206_CREST/resources/100206_CREST/files/MNINonLinear/Native/100206.R.sphere.MSMAll.native.surf.gii%20-o%20100206.R.sphere.MSMAll.native.surf.gii>
I get:
4175821 Nov 2 11:45 100206.R.sphere.MSMAll.native.surf.gii
with the following md5sum:
5478269f6345c91c0566d7bccf010860 100206.R.sphere.MSMAll.native.surf.gii
The md5sum from the file I’m retrieving via CREST/curl matches what I
get from the package.
Thanks,
Mike
*From:* hcp-users-boun...@humanconnectome.org
[mailto:hcp-users-boun...@humanconnectome.org] *On Behalf Of *Nicola
Toschi
*Sent:* Tuesday, October 31, 2017 10:42 PM
*To:* hcp-users <hcp-users@humanconnectome.org>
*Subject:* [HCP-Users] Discrepancy in files downloaded from the web
interface w.r.t CREST
Hi list,
though a processing error I noticed the following strange behaviour:
1) When i download the complete structural package using the Aspera
plugin and extract the file I am interested in, I get (for example):
rwxrwxrwx 1 nicola users 4175821 Nov 27 2015
100206.R.sphere.MSMAll.native.surf.gii
and this file works fine
2) When I fetch the same file through CREST/curl, I get a totally
different file size (no error messages):
-rw-r--r-- 1 nicola users 213364 Oct 30 19:56
100206.R.sphere.MSMAll.native.surf.gii
and a parse error when I try to use it.
Any Idea what I may be doing wrong?
Thanks in advance!!!
nicola
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