Hi all, I am very new to the HCP pipeline for preprocessing the data and I am trying to adopt to the pipeline. As the first step I am trying the execution of the pipeline with the example data that is given in the tutorial. The first part which is the PreFreeSurfer processing was completed successfully.
But I am having a problem with the second part, the FreeSurfer processing. When I start it, the process instantly comes to an end giving me the following error; ~/Pipelines/FreeSurfer/FreeSurferPipeline.sh: line 41: recon-all.v6.hires: command not found I double check the freesurfer installation and I source it as explained as well. Does this error has something to do with the installation? How can I fix it? Your help is much appreciated! Regards, Pubuditha [Western University] Pubuditha Abeyasinghe PhD Candidate Department of Physics and Astronomy Brain and Mind Institute Western University London, ON, Canada email: pabey...@uwo.ca _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users
