Hi Jenn, Thanks so much for the info. Do folks register their hypotheses somehow in the dbGaP (transparency and reliability measures percolating throughout the research community...particularly genetics). Cheers, JJ
~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ ~ Jenifer Juranek, PhD Director of the BRAIN Lab Associate Professor Department of Pediatrics McGovern Medical School UTHealth 713.500.8233 From: Elam, Jennifer [mailto:e...@wustl.edu] Sent: Friday, April 13, 2018 11:16 AM To: Juranek, Jenifer; hcp-users@humanconnectome.org Cc: thomas.nich...@bdi.ox.ac.uk Subject: Re: HCP Young Adult Genetics Data Released on dbGaP!! Hi Jenifer, I would use the search string: MH091657 OR "Human Connectome Project" to search PubMed for manuscripts that have correctly cited the WU-Minn-Oxford HCP grant (over 500 to date!). I am not aware of papers that fit your criteria, but Tom Nichols (CC'd) would know what's out there (and likely what's in the pipeline) from some of the community. Best, Jenn Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> e...@wustl.edu<mailto:e...@wustl.edu> www.humanconnectome.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.humanconnectome.org_&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=5lTvy6Wg6B_LOeHDopdvHe3rsvrZL4fUVf0hY0invSI&s=Ni2UWsDUMlmfG5dp9UYsUug5f-sXuQw6O2otLF2YrJw&e=> ________________________________ From: Juranek, Jenifer <jenifer.jura...@uth.tmc.edu<mailto:jenifer.jura...@uth.tmc.edu>> Sent: Thursday, April 12, 2018 10:03:18 PM To: Elam, Jennifer; hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org> Subject: Re: HCP Young Adult Genetics Data Released on dbGaP!! Just curious...is there an easy way to identify manuscripts already published using the HCP-YA genetics data? I found it tough to search in PubMed (HCP is a common acronym), and the HCP website might be incomplete? Specifically, have any papers come out yet which went beyond heritability analyses and used a structural genetics approach (maybe relating to brain structure/connectivity)? Many Thanks for any pointers you can provide. Cheers, Jenifer ________________________________ From: hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org> <hcp-users-boun...@humanconnectome.org<mailto:hcp-users-boun...@humanconnectome.org>> on behalf of Elam, Jennifer <e...@wustl.edu<mailto:e...@wustl.edu>> Sent: Friday, March 2, 2018 2:45:10 PM To: hcp-users@humanconnectome.org<mailto:hcp-users@humanconnectome.org>; hcp-annou...@humanconnectome.org<mailto:hcp-annou...@humanconnectome.org> Subject: [HCP-Users] HCP Young Adult Genetics Data Released on dbGaP!! News from the Human Connectome Project (HCP) March 2, 2018 The Human Connectome Project (HCP) WU-Minn consortium is pleased to announce the release of all SNP Genotypes collected for HCP-Young Adult (HCP-YA) subjects on dbGaP: Mapping the Human Connectome - Structure, Function, and Heritability: Healthy Young Adults (Age 22-35 Years) Including Twins and their Non-Twin Siblings dbGaP Study Accession: phs001364.v1.p1 https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/study.cgi?study_id=phs001364.v1.p1<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.ncbi.nlm.nih.gov_projects_gap_cgi-2Dbin_study.cgi-3Fstudy-5Fid-3Dphs001364.v1.p1&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=1krCazzqwwoiPwmyKujuyzk7O0lrio34VpkumdS1qYg&s=cdfWp3LrMcNFnrZ4tfCAtctlDvxd8PdAcFiBSmHab84&e=> The dbGaP data comprises array and imputed genotyping and a limited number of phenotypic variables (self reported sex, age, twin status, and family IDs) collected for 1142 of our 1206 released HCP-YA participants, including 149 pairs of genetically-confirmed monozygotic twins (298 participants) and 94 pairs of genetically-confirmed dizygotic twins (188 participants). Other open and restricted access subject variables are available in ConnectomeDB<https://urldefense.proofpoint.com/v2/url?u=https-3A__db.humanconnectome.org&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=1krCazzqwwoiPwmyKujuyzk7O0lrio34VpkumdS1qYg&s=bWE8uKTKb3gkwGUl37bm2Z4nbDvJ_RutabvREMGoUmY&e=>. dbGaP download of the HCP-YA data requires authorized access through a data access request initiated after logging into dbGaP with an eRA Commons<https://urldefense.proofpoint.com/v2/url?u=https-3A__era.nih.gov_commons-2Daccount-2Dinformation.cfm&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=1krCazzqwwoiPwmyKujuyzk7O0lrio34VpkumdS1qYg&s=s1S298Jf8bHrEKJWixReCPUs5ympl9TGCVtnag_kiOk&e=> PI account. General instructions for submitting a successful data access request<https://urldefense.proofpoint.com/v2/url?u=https-3A__www.ncbi.nlm.nih.gov_projects_gap_cgi-2Dbin_GetPdf.cgi-3Fdocument-5Fname-3DGeneralAAInstructions.pdf&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=1krCazzqwwoiPwmyKujuyzk7O0lrio34VpkumdS1qYg&s=NOYjB-AV_ZhDLnJzisHSKO1evGbGXdeekFjQ9c6cbm4&e=> for dbGaP are linked from the blue box on the study page. You will need to submit as part of the request: * A research statement and a nontechnical summary statement describing your planned use of the data. * The name of the institutional signing official who will certify the terms of use assurances on behalf of your institution. * A list of all internal investigators at your institution who will share access to the data for the proposed research. * A list of external collaborating investigators. * The name of the information technology (IT) Director for your institution. * Local Institutional Review Board (IRB) approval for use. Once you are logged in and click Create/Begin a New Research Project, on the Choose Datasets tab of the Project Request page, under Primary Disease select "Connectome" to find the HCP dataset. Then proceed with your application. Best, WU-Minn HCP Consortium Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387<tel:314-362-9387> e...@wustl.edu<mailto:e...@wustl.edu> www.humanconnectome.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.humanconnectome.org_&d=DwMFAw&c=6vgNTiRn9_pqCD9hKx9JgXN1VapJQ8JVoF8oWH1AgfQ&r=qOVBcC-E3i4BGdjp2AXfXidjspuPk5EgKLbpRj4WEsg&m=1krCazzqwwoiPwmyKujuyzk7O0lrio34VpkumdS1qYg&s=biS0HiQ1df8LXCEmCDRw4a7AMtnz2juZLO9BfosTJlI&e=> _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org<mailto:HCP-Users@humanconnectome.org> http://lists.humanconnectome.org/mailman/listinfo/hcp-users _______________________________________________ HCP-Users mailing list HCP-Users@humanconnectome.org http://lists.humanconnectome.org/mailman/listinfo/hcp-users